Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02969 and RBAM_017750

See Amino acid alignment / Visit BSNT_02969 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence dna-align/BSNT_02969___yneJ.1.9828.seq
#    -bsequence dna-align/RBAM_017750___ccdC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02969___yneJ-RBAM_017750___ccdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02969___yneJ-RBAM_017750___ccdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02969___yneJ
# 2: RBAM_017750___ccdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 490
# Identity:     384/490 (78.4%)
# Similarity:   384/490 (78.4%)
# Gaps:          14/490 ( 2.9%)
# Score: 1488.0
# 
#
#=======================================

BSNT_02969___      1 ATGATGATTATAGTTTCATCGATTATTGCTGTGTTAATGGCTGTAGCTGT     50
                     ||||||||||||.|||||||..|||||||.|.|...|||||..|..|.||
RBAM_017750__      1 ATGATGATTATAATTTCATCCGTTATTGCAGCGGCCATGGCAATTTCCGT     50

BSNT_02969___     51 GATGGTGGTCAGAATAAAGTCCTCTGACAAGCCTGTTTCACCAAAAAAAA    100
                     ||||.|.|||||.||.||.|||||.||||||||.|.||||||.|||||||
RBAM_017750__     51 GATGATCGTCAGGATTAAATCCTCCGACAAGCCCGCTTCACCTAAAAAAA    100

BSNT_02969___    101 TCATTCTTCCGCCGATTTTTATGAGTACGGGAGCGTTAATGTTTTTATTT    150
                     |.|||||.|||||||||||.|||||||||||||||.|.|||||..|.|||
RBAM_017750__    101 TAATTCTCCCGCCGATTTTCATGAGTACGGGAGCGCTTATGTTCCTTTTT    150

BSNT_02969___    151 CCGGTATTTT--GGGTAACTGGAGCAGAGTTTTTGGAAG-CATTCACTTT    197
                     |||  |||||  |.||.||.||.|.|||.||||||||.| |||| ||..|
RBAM_017750__    151 CCG--ATTTTCAGAGTGACGGGCGAAGAATTTTTGGAGGCCATT-ACGCT    197

BSNT_02969___    198 AGGTGTGATTTTCTCTATTTTTCTAATCAAAACTTCTAAGTTCGAAATTA    247
                     .||.|||||.||||||||||||||.||.|||||.|||||.||.||.||||
RBAM_017750__    198 GGGCGTGATCTTCTCTATTTTTCTGATTAAAACATCTAAATTTGAGATTA    247

BSNT_02969___    248 AAAATAATGAAATTTACATGAAACGCTCTAAAGCATTTGTTTTTAT----    293
                     |||||||||||||.||..|.|||||.||.|||||.|||||.|||||    
RBAM_017750__    248 AAAATAATGAAATCTATTTAAAACGGTCAAAAGCGTTTGTGTTTATCCTG    297

BSNT_02969___    294 ATTAGTCGGTCTTTTGGTGATCAGAATCGTGATGAAATCGATCTTGAGCA    343
                     |||    |||||.|||||.||||||||||..||||||||.||.|||||||
RBAM_017750__    298 ATT----GGTCTCTTGGTTATCAGAATCGCTATGAAATCCATTTTGAGCA    343

BSNT_02969___    344 CATCAATTGATTATGGTGCACTGAGCGGAATGTTTTGGATTCTGGCTTTC    393
                     |..|.||||||||.||.||..|.|||||||||||||||||||||||||||
RBAM_017750__    344 CGACGATTGATTACGGAGCTTTAAGCGGAATGTTTTGGATTCTGGCTTTC    393

BSNT_02969___    394 GGTATGATTGTGCCTTGGAGAATCGCCATGTATTTATCATATCGAAAACT    443
                     ||.||||||||.||.|||.|.|||||.||||.|||.||.||.||.|||||
RBAM_017750__    394 GGAATGATTGTCCCGTGGCGCATCGCGATGTTTTTGTCTTACCGCAAACT    443

BSNT_02969___    444 TCATAACGAGCTGCAGTCATCTAATATTCAAATGAATTAA    483
                     |...||.||.|||.||.|..||.|||||||.|||||||||
RBAM_017750__    444 TTCGAATGAACTGAAGACCGCTGATATTCAGATGAATTAA    483


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