Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02965 and RBAM_017720

See Amino acid alignment / Visit BSNT_02965 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence dna-align/BSNT_02965___ynzD.1.9828.seq
#    -bsequence dna-align/RBAM_017720___ynzD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02965___ynzD-RBAM_017720___ynzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02965___ynzD-RBAM_017720___ynzD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02965___ynzD
# 2: RBAM_017720___ynzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 198
# Identity:     147/198 (74.2%)
# Similarity:   147/198 (74.2%)
# Gaps:          30/198 (15.2%)
# Score: 607.0
# 
#
#=======================================

BSNT_02965___      1 ATGAAAGGATACATCCCTGTGATTAGAGAGCATCTATTAAAAGAAATTGA     50
                                       |||||||||||||||||||||||.||||||||
RBAM_017720__      1 ------------------GTGATTAGAGAGCATCTATTAAATGAAATTGA     32

BSNT_02965___     51 AAAAAAAAGAGCAGAGCTGCTGCAAATTGTCATGGCGAACGGAATGACAT    100
                     |||||||.|.|||||||||||..||||.||||||.|.|||||||||||||
RBAM_017720__     33 AAAAAAACGGGCAGAGCTGCTTAAAATCGTCATGACAAACGGAATGACAT     82

BSNT_02965___    101 CTCATATTACGATAGAGCTCAGTCAGGAGCTTGACCATCTTCTCATACAA    150
                     |..|.|||||||||||.|||||.||||||||||||||.||||||||||||
RBAM_017720__     83 CAAACATTACGATAGAACTCAGCCAGGAGCTTGACCACCTTCTCATACAA    132

BSNT_02965___    151 TATCAAAA------GCAGCGCCTTCGAGCAGTAGCGGGTGATGAATGA    192
                     ||.|||||      ||| |.||    .|||||.| ||||||...||||
RBAM_017720__    133 TACCAAAAAGAACTGCA-CACC----GGCAGTTG-GGGTGAAACATGA    174


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