Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02962 and RBAM_017700

See Amino acid alignment / Visit BSNT_02962 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence dna-align/BSNT_02962___yneE.1.9828.seq
#    -bsequence dna-align/RBAM_017700___yneE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02962___yneE-RBAM_017700___yneE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02962___yneE-RBAM_017700___yneE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02962___yneE
# 2: RBAM_017700___yneE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity:     345/456 (75.7%)
# Similarity:   345/456 (75.7%)
# Gaps:          18/456 ( 3.9%)
# Score: 1268.0
# 
#
#=======================================

BSNT_02962___      1 ATGGAACGTCACTACTATACGTACCTGATCAAAGAGGAATTTGCCAATCA     50
                     |||||||||||.||||||||..|||||||.||.||.||.|||||.||.||
RBAM_017700__      1 ATGGAACGTCATTACTATACACACCTGATAAAGGATGAGTTTGCGAACCA     50

BSNT_02962___     51 CTATTTCGGCCGGGAATCGGTTATGTTTGAGCTGTTTCAAGACTATCATT    100
                     |||.|||||.||||||.|||.||||||||||.||||||.|||||||||||
RBAM_017700__     51 CTACTTCGGGCGGGAAACGGCTATGTTTGAGTTGTTTCGAGACTATCATT    100

BSNT_02962___    101 GGACAAGCCTTGA-AAAGCAGCAGTATGAAATGACAGAGAAACAGATTCA    149
                     |||| ||.|.||| |...|||.|.|||.||||||||||.||.||..||||
RBAM_017700__    101 GGAC-AGACCTGACACCCCAGGAATATCAAATGACAGAAAAGCAAGTTCA    149

BSNT_02962___    150 ATATATTACACAACCAATCCCGATTTTACATATGCATCAGCGGTTAAAAA    199
                     ||||||.||..||||.||.|||.|..||||||||||||||||..|..|..
RBAM_017700__    150 ATATATAACGGAACCGATTCCGGTGATACATATGCATCAGCGTCTCCAGC    199

BSNT_02962___    200 TGAATTTAAACAAGACGGA-TTACAGGCAGCTGGATTATATTTATAGAAT    248
                     ||.|||||||| .||..|| ||||||.|...||||||..|||||..|   
RBAM_017700__    200 TGCATTTAAAC-CGAATGAGTTACAGCCGTTTGGATTCCATTTACCG---    245

BSNT_02962___    249 AGCTT----TGCCGAAAGCAAAAGGCCACGCGACGTTTATGATGAAGGAG    294
                      ||||    ||||...||.|||.||||.|||.||.||.||||||||.|  
RBAM_017700__    246 -GCTTACACTGCCCGGAGAAAAGGGCCGCGCCACCTTCATGATGAAAG--    292

BSNT_02962___    295 CACA---TGATAGAAATTGTGGCTTCGGGAGATTACGAGGCAGAAACGAT    341
                      |||   |.||.||.||||.|||||||||||||||.|||||.||||||||
RBAM_017700__    293 -ACAGTTTAATTGAGATTGCGGCTTCGGGAGATTATGAGGCGGAAACGAT    341

BSNT_02962___    342 ATTCTTTGAAGTGTTAAGAAAAGTAAGCCCTTGCTTTTTAGCAATGGATT    391
                     .||||||||..|..|..|.|||.|.|||||.||.|||.|.||||||||||
RBAM_017700__    342 TTTCTTTGAGATTCTGCGTAAAATCAGCCCCTGTTTTCTTGCAATGGATT    391

BSNT_02962___    392 TCAATTCGAAGCGTTACGGATGGCTAAATCCGGTGAAAGAAAGAAATTTT    441
                     ||||..|...|||.|||||.|||.||||||||||.|.|||||||||||||
RBAM_017700__    392 TCAAGACACGGCGCTACGGGTGGTTAAATCCGGTCAGAGAAAGAAATTTT    441

BSNT_02962___    442 GTCTAA    447
                     ||||||
RBAM_017700__    442 GTCTAA    447


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