Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02953 and RBAM_017630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_02953.1.9828.seq
# -bsequence dna-align/RBAM_017630___yndM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02953-RBAM_017630___yndM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02953-RBAM_017630___yndM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02953
# 2: RBAM_017630___yndM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity: 299/498 (60.0%)
# Similarity: 299/498 (60.0%)
# Gaps: 96/498 (19.3%)
# Score: 782.0
#
#
#=======================================
BSNT_02953 1 ATGAAACATATCATTGCGCTTGCTTCAAAGATTGCTTTCACTCTCGCCCT 50
||||||||..|.|||||..|.|||||.||.|..||..||||.||.| ||
RBAM_017630__ 1 ATGAAACACGTAATTGCTTTCGCTTCTAAAACGGCGCTCACACTTG--CT 48
BSNT_02953 51 TT----TATATGTGATTTTGGACAGAGTC-----TATCACGCATCCTTCT 91
|| ||.|| || ||||||| || ||.||.|.|.||||.|
RBAM_017630__ 49 TTACTGTACAT-TG-TTTTGGA-----TCTTATGTACCAAGTAACCTTTT 91
BSNT_02953 92 TAAGTGTGATGTTTATTGCACTTTTCTTAGGTTTTGTTTCCTATCTTTCT 141
|||..||..||||||||.||.|..|||||.||||..|..|.|||.||.|.
RBAM_017630__ 92 TAAACGTTCTGTTTATTACAGTGATCTTAAGTTTAATCACTTATTTTGCG 141
BSNT_02953 142 GGTGA---CATGCTCGTCTTACCCAGAACAAACAATATTACAGCTTCATT 188
||||| ||||.| || |.||.|||||||.||||.|.||||| |.||
RBAM_017630__ 142 GGTGATTGCATGAT--TC-TGCCGAGAACAAGCAATTTCACAGC--CGTT 186
BSNT_02953 189 G--GCTGACTTTGGCCTTTCATTCGTTATTCTTTGGGTATTTGTTTTAAC 236
| |||||.||.||..||||||||.||||..|.|||.||||..||
RBAM_017630__ 187 GCAGCTGATTTCGGAATTTCATTCATTATATTATGGATATTCCTT----- 231
BSNT_02953 237 CCAAACAAGAAAC-------GATT-----TCTCACCATT----TGG-AGC 269
|..||| |||| ||||.|| | ||| |.|
RBAM_017630__ 232 -------ATGAACATTGGCGGATTTAATGTCTCTCC--TGCCGTGGCATC 272
BSNT_02953 270 AGCTCTCCTTTCCGC----TGCCTGTCTTACTGTTTTTGAATTCTTTTTT 315
||.|.|| ||.|| ||| .||.||||||||||....||||||
RBAM_017630__ 273 AGTTATC---TCTGCACTTTGC----ATTTCTGTTTTTGAGGCATTTTTT 315
BSNT_02953 316 CATCGGTATTTATTGAAAAATGTACTTGATGAAAATT-TCCGAAATGAAC 364
||.||||||||...|.||.||||||||...|||.||| ||.|.|...||
RBAM_017630__ 316 CACCGGTATTTGCAGCAATATGTACTTCCCGAAGATTATCAGGACACAA- 364
BSNT_02953 365 TGTCAGCGAGAGATAACACG--TTGCAG-TATCAAACGGAAGCCGCGGAC 411
|||.||..||||.|||| .||.|| ||||||||.||.||..|.||.
RBAM_017630__ 365 ---CAGAGACGGATAGCACGCTATGGAGCTATCAAACCGAGGCGTCTGAA 411
BSNT_02953 412 GAGCTGTTTCCCGAAACGAA-----TGAG----AAGCATAAAGAATAG 450
||..|..|.||.|||| || |.|| ||.|||||
RBAM_017630__ 412 GAATTAGTGCCGGAAA--AAGACCCTCAGGAAAAAACATAA------- 450
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