Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02952 and RBAM_017610

See Amino acid alignment / Visit BSNT_02952 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_02952___yndL.1.9828.seq
#    -bsequence dna-align/RBAM_017610___yndL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02952___yndL-RBAM_017610___yndL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02952___yndL-RBAM_017610___yndL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02952___yndL
# 2: RBAM_017610___yndL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity:     523/894 (58.5%)
# Similarity:   523/894 (58.5%)
# Gaps:         207/894 (23.2%)
# Score: 1542.0
# 
#
#=======================================

BSNT_02952___      0 --------------------------------------------------      0
                                                                       
RBAM_017610__      1 ATGGCAAAAAGGGTTAGAAGAGTAGACTGTAAAGCAGCTGGCAAAGAGGC     50

BSNT_02952___      1 -------ATGAAACCGGCCAAAGTATCCCTGCTCCGCCGTTTGCTCCATT     43
                            |.|||||||.|||||||..|||||.||.||||||.|||.||..
RBAM_017610__     51 AGAGCAGAAGAAACCGTCCAAAGTCACCCTGTTCTGCCGTTCGCTTCAAA    100

BSNT_02952___     44 CCTTGAAGCATGTTG-ATTGTAACATAGCCAAACGTTTTCCATCAACTAT     92
                     ...|||||||| ||| |||||||||||..||.||...|.|||||||..|.
RBAM_017610__    101 GGCTGAAGCAT-TTGTATTGTAACATAAACATACAAATGCCATCAATAAC    149

BSNT_02952___     93 TAAAATTGTAAAATTATTGTTTATTTTTATGGTATTTACT----CCGATT    138
                     .||||..|.||..|||.| ||||.|||||..||.|||.||    |||  |
RBAM_017610__    150 CAAAAAAGGAATTTTAGT-TTTAATTTTACCGTTTTTGCTTCTGCCG--T    196

BSNT_02952___    139 TCTTCAATTTATGCTGA---------AGATATATA--TCAGAATTTTGAG    177
                     |||    ||...|||||         ||||||.||  .|||  |||.|||
RBAM_017610__    197 TCT----TTCGGGCTGATGCCGCTTCAGATATTTACGGCAG--TTTCGAG    240

BSNT_02952___    178 GAATTAAAAAACAATGAAGATCCTTCTGATT-----------ACGGTGTT    216
                     ||||||||....|||||||||||||..||||           |||     
RBAM_017610__    241 GAATTAAAGCTGAATGAAGATCCTTTCGATTTTTCCATTTCAACG-----    285

BSNT_02952___    217 GTTACGAAAGAA--ACCGGAAGCC--CTGTTCTTGTTTTAGCTATTCACG    262
                         |||.||.|  ||      ||  ||||.||..|.||||||||.||||
RBAM_017610__    286 ----CGAGAGCATGAC------CCTTCTGTCCTCATATTAGCTATACACG    325

BSNT_02952___    263 GAGGAGGTATTGAAGGTGGGACAAGTGAAGTAGCCAGAGAGCT--CAGCA    310
                     |||||||.||.||....|||||.|||||..|||||||.||..|  |.|.|
RBAM_017610__    326 GAGGAGGCATAGAGCCGGGGACCAGTGAGTTAGCCAGTGAAATTGCCGAA    375

BSNT_02952___    311 AA---GAGTACTCGATGTATTTATTTGAAGGCTTAAAATCTGCAGGAAAC    357
                     ||   ||||     .|.||||||||||||||.||||||.|.||.||.||.
RBAM_017610__    376 AACCGGAGT-----TTATATTTATTTGAAGGGTTAAAACCAGCCGGTAAT    420

BSNT_02952___    358 TCAGTCCTGCACATTACGAGCACGCACTTTGATGAACCTCGGGCCCTTAA    407
                     .|.|..|||||..|.||.||..||||.||.||||||||...||||.|..|
RBAM_017610__    421 GCGGCTCTGCATTTGACAAGTTCGCATTTCGATGAACCGAAGGCCGTGCA    470

BSNT_02952___    408 AATGACGGGAAA--------TCATGAATATGTCATTTCATTACACGGGTA    449
                     ||||  |.||||        ||      |||||||||||||.|||||.||
RBAM_017610__    471 AATG--GTGAAAGAGCACTCTC------ATGTCATTTCATTGCACGGTTA    512

BSNT_02952___    450 C-GCAGAAGAAGATCAGCAGATCGAAGTCGGCGGTACAGATCGCGTAAGA    498
                     | |||| .||.|||.|..||||..||.|||||||||||||..|    |||
RBAM_017610__    513 CGGCAG-TGACGATAAAAAGATAAAAATCGGCGGTACAGACAG----AGA    557

BSNT_02952___    499 GC-GGCAGA--TTTAGTTGA----------GAAATTGCAGCATGCCGGTT    535
                     .| |||.||  ||   ||||          ||||..|||      |||.|
RBAM_017610__    558 ACGGGCCGAACTT---TTGACCGATGTGCTGAAACGGCA------CGGGT    598

BSNT_02952___    536 TTCCTGCTGT-------------ATTGCTCAATACGGACCATCCACATGC    572
                     .||||||.||             |.||.|.|||             ||||
RBAM_017610__    599 ATCCTGCCGTTCTTCTTGGCATAAATGATAAAT-------------ATGC    635

BSNT_02952___    573 GGGCGTTAGTCCGAATAACATTGCAAATAAATCAAAAACAGGTTTAAGTA    622
                     .|||||.||||||||.|||.||||.|||.||||...|.|.||.||.||||
RBAM_017610__    636 AGGCGTCAGTCCGAACAACCTTGCCAATCAATCTTCATCCGGATTGAGTA    685

BSNT_02952___    623 TCCAGATAGAAATGAGCACAGGCTTTCGAAAGTCTTTGTTCGGCATCTTT    672
                     |.||.||.|||||||||||.|||||..|||..||..|.||.|.|| ||||
RBAM_017610__    686 TTCAAATCGAAATGAGCACCGGCTTCAGAAGATCACTATTTGACA-CTTT    734

BSNT_02952___    673 T-CTTTAAAAAGCAGAGCTGTTACTCAAAATGAGAGGTTTTATAAGTTTA    721
                     | |..|.|||||||||||....||.|||||||.||..||||||.|.||.|
RBAM_017610__    735 TACGCTGAAAAGCAGAGCATCCACACAAAATGGGACCTTTTATCAATTCA    784

BSNT_02952___    722 CAGAAGTGATGTTCCG-TTTTCTCA-----AATATAGCTACTGA    759
                     ||.||..||| |||.| ||||.|||     |||     ||.|.|
RBAM_017610__    785 CAAAAACGAT-TTCTGATTTTATCAGTGACAAT-----TATTAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02952 and RBAM_017610

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
