Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02893 and RBAM_017520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_02893.1.9828.seq
# -bsequence dna-align/RBAM_017520___ynaE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02893-RBAM_017520___ynaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02893-RBAM_017520___ynaE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02893
# 2: RBAM_017520___ynaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 360/653 (55.1%)
# Similarity: 360/653 (55.1%)
# Gaps: 175/653 (26.8%)
# Score: 1248.0
#
#
#=======================================
BSNT_02893 0 -------------------------------------------------- 0
RBAM_017520__ 1 ATGAAAATAAATGATTATCTGAAGGAAAGGTTTCCGACTTTAAAATTAGT 50
BSNT_02893 0 -------------------------------------------------- 0
RBAM_017520__ 51 GCCCGGCATTTATCATCAATGGCACGTGGGAATTCATTTTTCTCTCGGCG 100
BSNT_02893 1 --------------------------------TTGAATCTTAAGAGATTT 18
|||||||||.||...|||
RBAM_017520__ 101 GCAATATGTATCAATTTAATGAAAGCGGTGCTTTGAATCTTGAGTATTTT 150
BSNT_02893 19 CGGTTTGTATATGAGCAAATCTCAACCATTTTCAATCAATTATTTGAACA 68
|.|.||||..||.|.||||.|.|..|..||||||||.|..|.||||||||
RBAM_017520__ 151 CAGCTTGTCCATCATCAAACCGCCGCACTTTTCAATGAGCTGTTTGAACA 200
BSNT_02893 69 AAACGATGACATATTCCTTGTGACGAATATGTATAAGCACAAAAC-CAAT 117
.|.|||||||.|.||.|||||..|.||..|||||||||||||||| |||.
RBAM_017520__ 201 TAGCGATGACTTGTTTCTTGTTGCCAACGTGTATAAGCACAAAACTCAAG 250
BSNT_02893 118 GACAAATTTAT--AAAAAAATTGAAGGTGTACCAACCGTTTCTAAAGTGT 165
| .|.|.|| .|.||||||.|||||.||.||.||||||||.||||||
RBAM_017520__ 251 G---TAATCATGCGAGAAAATTAAAGGTTTATCAGCCGTTTCTGAAGTGT 297
BSNT_02893 166 AAAAATTATTTAAATCAAATTCAAGTAAAGACATATTCCTACCCGTTTGA 215
||..||.|||||.|||..||||||||.|||||.|.|.|.|.||||.|.||
RBAM_017520__ 298 AAGGATGATTTATATCGGATTCAAGTGAAGACCTGTCCATGCCCGGTCGA 347
BSNT_02893 216 GATAGATGAAGCTGAAGAATACGAGATGCAACAATTTTCCTTGTTATGCA 265
.||||||||.||.|||||.||.|||||.||.|||||.|
RBAM_017520__ 348 ------------AGAAGAATATGAAATGCAGCAGTTTTCTTTATTATGTA 385
BSNT_02893 266 AACCTCGAGACTTACATGTAGCTGAACTACTTAAAGCAGCCAGT-AATGA 314
|||....|||..|.|.|.|..|..||.|||||||.|||||| || .|.||
RBAM_017520__ 386 AACGGAAAGATCTGCGTATCCCCCAATTACTTAAGGCAGCC-GTCCACGA 434
BSNT_02893 315 AGATTTTCCATTGAAACCGAGATTCGGGGGTTACTCTATTGATTACCCTG 364
|||||||||..||||.||.||.||||||||.|..||..|||..||.||||
RBAM_017520__ 435 AGATTTTCCGCTGAAGCCAAGGTTCGGGGGCTGTTCCGTTGGGTATCCTG 484
BSNT_02893 365 ATGTTTTCTTTGTGAACATTACAAAAGACATTATTTTCTTTATCTATGAT 414
||||||||||||||.|.||.||||||||.||||||||||||.|.||||||
RBAM_017520__ 485 ATGTTTTCTTTGTGGATATGACAAAAGATATTATTTTCTTTCTGTATGAT 534
BSNT_02893 415 GACCGAGGATGTGAAGTCATAGCTCTTGATTTCAAACGAATACGTCCACT 464
|||.||||.|||||||||||.|||||||||..|..|.|||||||....||
RBAM_017520__ 535 GACAGAGGGTGTGAAGTCATTGCTCTTGATGCCGGAAGAATACGAAAGCT 584
BSNT_02893 465 TAATGAAAAATATCACAACTGGGTAGAA-------GAATATAAATACATA 507
|.||||..||||||||.|.|||.|.||| ||
RBAM_017520__ 585 TTATGATCAATATCACGATTGGATTGAATTGGACTGA------------- 621
BSNT_02893 508 TAA 510
RBAM_017520__ 621 --- 621
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