Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02914 and RBAM_017400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_02914.1.9828.seq
# -bsequence dna-align/RBAM_017400.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02914-RBAM_017400.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02914-RBAM_017400.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02914
# 2: RBAM_017400
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 507
# Identity: 256/507 (50.5%)
# Similarity: 256/507 (50.5%)
# Gaps: 165/507 (32.5%)
# Score: 483.0
#
#
#=======================================
BSNT_02914 1 GTGTTTAAGAAAATTGTGGTAGG-----TTCGATTTT-AGTTAGTTCAAT 44
.||...|||||||||.|.|..|| || |.|||| .||||.|||.||
RBAM_017400 1 ATGAAAAAGAAAATTATTGCCGGCGCTCTT-GCTTTTGGGTTAATTCCAT 49
BSNT_02914 45 TACAGGATTAAGCTCTACTTATGCTTCAGC--------TGC---ATCAAT 83
||..|| |..||.|..|||.|||.|| ||| |||||
RBAM_017400 50 TAATGG-----GGACTGCAGATGTTTCTGCAAAACCTTTGCCAAATCAA- 93
BSNT_02914 84 TGACCACACACCTAAAAAAGTCA------CTGC--GTT-------TGCCG 118
|| ||||| ||| |||| ||| ||.||
RBAM_017400 94 -GA---------TAAAA---TCATGAAACCTGCTGGTTGGTCATGTGACG 130
BSNT_02914 119 CACAATCCG-ATATT-------ATACTAGAAGAGGAAGAAACGTT---TA 157
| |||| ||||| |..|| || |.
RBAM_017400 131 C----TCCGTATATTGCGTGTCAGCCT----------------TTTTCTG 160
BSNT_02914 158 GAGGTGACGGAAAATTTTATTTTGATTATTATGGAAG-------TGAAGA 200
|.|||..|||.||..|||..||..|.|||.|.||.|| .|||
RBAM_017400 161 GCGGTACCGGTAAGGTTTCATTCAACTATCAAGGCAGCTCTCCAGGAA-- 208
BSNT_02914 201 TGGCGAAATCAGAGTTTTTGTTGAGAAT-ACAGGAAGCAATCCATTTGAA 249
||||||||||||||||||.|||| || ||.|||||..|.||..||
RBAM_017400 209 -----AAATCAGAGTTTTTGTTGCGAATGAC-GGCAGCAAATCTTTCAAA 252
BSNT_02914 250 TTCAAAATTGTAA--AACCAGGTGGTGGA--ACAATCGCTTCCGGCTA-T 294
||||..|| ||| |.||...|| ||| |||.||...||| .||| .
RBAM_017400 253 TTCACCAT--TAATTATCCTAATG--GGAATACACTCTTATCC-TCTACG 297
BSNT_02914 295 ACAGTTAAA--CCTGGCAAAAGT-------GTAACTC-----TAACTCTT 330
||| ||||| |..||.|||.|| |.||.|| ||||
RBAM_017400 298 ACA-TTAAATGCGGGGAAAACGTTCATTCAGGAATTCAGCGTTAAC---- 342
BSNT_02914 331 GACGTATCA-----CACTATAAAACCGGAACATATTATATTCG----CTG 371
|| .|..|||.|.||.||| ||||.||| .|| |.|
RBAM_017400 343 -------CAAAAAGGAGAATACATCCTGAA-ATATGATA-GCGGCACCGG 383
BSNT_02914 372 TCAAAATGATGATGG--AGCTAAGATAAAAGCTTTTGCAAAAGTGCGTGC 419
|.|.|.||..||||| ...|.|||| ||.|||..|
RBAM_017400 384 TGATAGTGTCGATGGTTTCTTTAGAT-----CTGTTGAGA---------- 418
BSNT_02914 420 TCTCTAA 426
|||||
RBAM_017400 419 --TCTAA 423
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