Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02914 and RBAM_017400

See Amino acid alignment / Visit BSNT_02914 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_02914.1.9828.seq
#    -bsequence dna-align/RBAM_017400.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02914-RBAM_017400.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02914-RBAM_017400.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02914
# 2: RBAM_017400
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 507
# Identity:     256/507 (50.5%)
# Similarity:   256/507 (50.5%)
# Gaps:         165/507 (32.5%)
# Score: 483.0
# 
#
#=======================================

BSNT_02914         1 GTGTTTAAGAAAATTGTGGTAGG-----TTCGATTTT-AGTTAGTTCAAT     44
                     .||...|||||||||.|.|..||     || |.|||| .||||.|||.||
RBAM_017400        1 ATGAAAAAGAAAATTATTGCCGGCGCTCTT-GCTTTTGGGTTAATTCCAT     49

BSNT_02914        45 TACAGGATTAAGCTCTACTTATGCTTCAGC--------TGC---ATCAAT     83
                     ||..||     |..||.|..|||.|||.||        |||   ||||| 
RBAM_017400       50 TAATGG-----GGACTGCAGATGTTTCTGCAAAACCTTTGCCAAATCAA-     93

BSNT_02914        84 TGACCACACACCTAAAAAAGTCA------CTGC--GTT-------TGCCG    118
                      ||         |||||   |||      ||||  |||       ||.||
RBAM_017400       94 -GA---------TAAAA---TCATGAAACCTGCTGGTTGGTCATGTGACG    130

BSNT_02914       119 CACAATCCG-ATATT-------ATACTAGAAGAGGAAGAAACGTT---TA    157
                     |    |||| |||||       |..||                ||   |.
RBAM_017400      131 C----TCCGTATATTGCGTGTCAGCCT----------------TTTTCTG    160

BSNT_02914       158 GAGGTGACGGAAAATTTTATTTTGATTATTATGGAAG-------TGAAGA    200
                     |.|||..|||.||..|||..||..|.|||.|.||.||       .|||  
RBAM_017400      161 GCGGTACCGGTAAGGTTTCATTCAACTATCAAGGCAGCTCTCCAGGAA--    208

BSNT_02914       201 TGGCGAAATCAGAGTTTTTGTTGAGAAT-ACAGGAAGCAATCCATTTGAA    249
                          ||||||||||||||||||.|||| || ||.|||||..|.||..||
RBAM_017400      209 -----AAATCAGAGTTTTTGTTGCGAATGAC-GGCAGCAAATCTTTCAAA    252

BSNT_02914       250 TTCAAAATTGTAA--AACCAGGTGGTGGA--ACAATCGCTTCCGGCTA-T    294
                     ||||..||  |||  |.||...||  |||  |||.||...||| .||| .
RBAM_017400      253 TTCACCAT--TAATTATCCTAATG--GGAATACACTCTTATCC-TCTACG    297

BSNT_02914       295 ACAGTTAAA--CCTGGCAAAAGT-------GTAACTC-----TAACTCTT    330
                     ||| |||||  |..||.|||.||       |.||.||     ||||    
RBAM_017400      298 ACA-TTAAATGCGGGGAAAACGTTCATTCAGGAATTCAGCGTTAAC----    342

BSNT_02914       331 GACGTATCA-----CACTATAAAACCGGAACATATTATATTCG----CTG    371
                            ||     .|..|||.|.||.||| ||||.||| .||    |.|
RBAM_017400      343 -------CAAAAAGGAGAATACATCCTGAA-ATATGATA-GCGGCACCGG    383

BSNT_02914       372 TCAAAATGATGATGG--AGCTAAGATAAAAGCTTTTGCAAAAGTGCGTGC    419
                     |.|.|.||..|||||  ...|.||||     ||.|||..|          
RBAM_017400      384 TGATAGTGTCGATGGTTTCTTTAGAT-----CTGTTGAGA----------    418

BSNT_02914       420 TCTCTAA    426
                       |||||
RBAM_017400      419 --TCTAA    423


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