Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02903 and RBAM_017340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_02903___xylR.1.9828.seq
# -bsequence dna-align/RBAM_017340___xylR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02903___xylR-RBAM_017340___xylR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02903___xylR-RBAM_017340___xylR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02903___xylR
# 2: RBAM_017340___xylR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1159
# Identity: 1032/1159 (89.0%)
# Similarity: 1032/1159 (89.0%)
# Gaps: 8/1159 ( 0.7%)
# Score: 4663.0
#
#
#=======================================
BSNT_02903___ 1 GTGGATATCGCTGATCAAACCTTTGTCAAAAAAGTAAATCAAAAGTTATT 50
||||||||||||||||||.||||||||||||||||.||.|||||||||||
RBAM_017340__ 1 GTGGATATCGCTGATCAAGCCTTTGTCAAAAAAGTTAACCAAAAGTTATT 50
BSNT_02903___ 51 ATTAAAAGAAATCCTTAAAAATTCACCTATTTCAAGAGCAAAATTATCTG 100
|.||||.|||||.|||||.|||||.|||||||||||||||||||||||||
RBAM_017340__ 51 ACTAAACGAAATACTTAAGAATTCTCCTATTTCAAGAGCAAAATTATCTG 100
BSNT_02903___ 101 AAATGACTGGATTAAATAAATCAACTGTTTCATCACAGGTAAACACGTTA 150
|||||||.|||||||||||||||||||||||.||||||||||||||.|||
RBAM_017340__ 101 AAATGACCGGATTAAATAAATCAACTGTTTCGTCACAGGTAAACACATTA 150
BSNT_02903___ 151 ATGAAAGAAAATCTGGTATTTGAAATAGGTCAAGGAAAATCAAGTGGCGG 200
|||||||||||.||.|||||||||||.|||||.|||.|||||||.|||||
RBAM_017340__ 151 ATGAAAGAAAACCTCGTATTTGAAATCGGTCAGGGACAATCAAGCGGCGG 200
BSNT_02903___ 201 AAGAAGACCTGTCATGCTTGTTTTTAATAAAAAGGCAGGATACTCCGTAG 250
.|||||||||||.||||||||||||||||||||.||||||||||||||||
RBAM_017340__ 201 CAGAAGACCTGTTATGCTTGTTTTTAATAAAAAAGCAGGATACTCCGTAG 250
BSNT_02903___ 251 GAATAGATGTTGGTGTGGATTATATCAATGGCATTTTAACAGACCTTGAA 300
|||||||||||||.|||||||||.|.|||||||||||||||||.||||||
RBAM_017340__ 251 GAATAGATGTTGGCGTGGATTATGTTAATGGCATTTTAACAGATCTTGAA 300
BSNT_02903___ 301 GGAACGATCGTTCTTGATCAATACTGCCATTTGGAATCCAATTCTCCAGA 350
|||||||||||.|||||||||.||..|||||||||||.||||||||||||
RBAM_017340__ 301 GGAACGATCGTCCTTGATCAACACCACCATTTGGAATGCAATTCTCCAGA 350
BSNT_02903___ 351 AATAACGAAAGACATTTTGATTGATATGATTCATCACTTTATTACGCATA 400
|||.||.|||||.|||||.|||||.|||||||||||.||||||.|..|.|
RBAM_017340__ 351 AATCACTAAAGATATTTTAATTGAGATGATTCATCATTTTATTGCAAAAA 400
BSNT_02903___ 401 TGCCCCAATCTCCGTACGGGCTTATTGGTATAGGTATTTGCGTGCCTGGA 450
||||.||||||||.|||||.||||||||||||||.||.||||.|||.||.
RBAM_017340__ 401 TGCCGCAATCTCCATACGGTCTTATTGGTATAGGGATATGCGCGCCCGGG 450
BSNT_02903___ 451 CTCATTGATAAAGATCAAAAAATTGTTTTCACTCCGAACTCCAACTGGAG 500
||.|||||.|||.|||||||||||||||||.||||||||.||||||||||
RBAM_017340__ 451 CTGATTGACAAAAATCAAAAAATTGTTTTCGCTCCGAACGCCAACTGGAG 500
BSNT_02903___ 501 AGATATTGACTTAAAATCTTCGATACAAGAGAAGTACAATGTGCCTGTTT 550
||||||||||||||||||||..||.|||.||||||.|||||||||.||||
RBAM_017340__ 501 AGATATTGACTTAAAATCTTTCATCCAAAAGAAGTTCAATGTGCCCGTTT 550
BSNT_02903___ 551 TTATTGAAAATGAGGCAAATGCTGGCGCATATGGAGAGAAAGTATTTGGA 600
||||||||||||||||||||||.||||||||||||||.|||||||||||.
RBAM_017340__ 551 TTATTGAAAATGAGGCAAATGCCGGCGCATATGGAGAAAAAGTATTTGGT 600
BSNT_02903___ 601 GCTGCAAAAAATCACGATAACATTATTTACGTAAGTATCAGCACAGGGAT 650
|||||||||||||||||||||||||||||.|.|||||||.|.|||||.||
RBAM_017340__ 601 GCTGCAAAAAATCACGATAACATTATTTATGCAAGTATCGGTACAGGAAT 650
BSNT_02903___ 651 AGGGATCGGTGTTATTATCAACAATCATTTATATAGAGGAGTAAGCGGCT 700
|||||||||.|||||.|||||||||||||||||||||||.||..||||.|
RBAM_017340__ 651 AGGGATCGGCGTTATGATCAACAATCATTTATATAGAGGGGTTGGCGGAT 700
BSNT_02903___ 701 TCTCTGGAGAAATGGGACATATGACAATAGACTTTAATGGTCCTAAATGC 750
||||||||||||||||.||||||||||||||||||||.||||||||||||
RBAM_017340__ 701 TCTCTGGAGAAATGGGGCATATGACAATAGACTTTAAGGGTCCTAAATGC 750
BSNT_02903___ 751 AGTTGCGGAAACCGAGGCTGCTGGGAATTGTATGCTTCAGAGAAGGCTTT 800
||.|||||||||||||||||||||||||||||||||||||||||||||||
RBAM_017340__ 751 AGCTGCGGAAACCGAGGCTGCTGGGAATTGTATGCTTCAGAGAAGGCTTT 800
BSNT_02903___ 801 ATTAACATCTCTTCAGACTAAAGCGAAAAAACTGTCCTATCAAGATATCA 850
|.||||||||||||||||.||||.|||||||.|||||...||||||||||
RBAM_017340__ 801 AGTAACATCTCTTCAGACGAAAGAGAAAAAAGTGTCCAGCCAAGATATCA 850
BSNT_02903___ 851 TAGACCTCGCCCATCTGAATGATATCGGAACCTTAAACGCATTACAGAAT 900
|||||||.|||||||||||||||.|.|||||.|||.|.||||||||||||
RBAM_017340__ 851 TAGACCTTGCCCATCTGAATGATGTTGGAACTTTACAGGCATTACAGAAT 900
BSNT_02903___ 901 TTTGGATTCTATTTAGGAATAGGCCTTACCAATATTTTGAATACTTTCAA 950
|||||.||||||||||||||||||||.|||||||||||.|||||.||.||
RBAM_017340__ 901 TTTGGTTTCTATTTAGGAATAGGCCTGACCAATATTTTAAATACATTTAA 950
BSNT_02903___ 951 CCCACAGGCCGTAATTTTAAGAAATAGCATAATTGAATCGCATCCTATGG 1000
.||.||.|||.|.|||||||||||.|||||.|||||||||||||||||||
RBAM_017340__ 951 TCCGCAAGCCATCATTTTAAGAAACAGCATCATTGAATCGCATCCTATGG 1000
BSNT_02903___ 1001 TTTTAAATTCAATGAGAAGTGAAGTGTCGTCAAGGGTTTATTCCCAATTA 1050
|||||.|||||||.|.||||||||||||.||.|||||||||||||||.||
RBAM_017340__ 1001 TTTTACATTCAATTAAAAGTGAAGTGTCATCCAGGGTTTATTCCCAACTA 1050
BSNT_02903___ 1051 GGCAATAGCTATGAATTATTGCCATCTTCCTTAGGACAGAATGCACCGGC 1100
|.||.|||||||||||||||.||||||..|||||||.|.||||||||.||
RBAM_017340__ 1051 GACAGTAGCTATGAATTATTACCATCTATCTTAGGAAAAAATGCACCCGC 1100
BSNT_02903___ 1101 ATTAGGAATGTCCTCCATTGTGATTGATCATTTTCTGGACATGATTACAA 1150
..|||||||||||||||||||.||||||||||||||.||||||.|| ||
RBAM_017340__ 1101 TCTAGGAATGTCCTCCATTGTTATTGATCATTTTCTCGACATGGTT-CA- 1148
BSNT_02903___ 1151 TGTAA---- 1155
|||
RBAM_017340__ 1149 --TAACTGA 1155
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