Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02801 and RBAM_017250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_02801___glnR.1.9828.seq
# -bsequence dna-align/RBAM_017250___glnR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02801___glnR-RBAM_017250___glnR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02801___glnR-RBAM_017250___glnR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02801___glnR
# 2: RBAM_017250___glnR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 339/409 (82.9%)
# Similarity: 339/409 (82.9%)
# Gaps: 5/409 ( 1.2%)
# Score: 1413.5
#
#
#=======================================
BSNT_02801___ 1 ATGAGTGATAATATTCGCCGCTCAATGCCTTTATTTCCAATAGGAATTGT 50
|||||||||||.|||||||||||||||||||||||||||||.||.|||||
RBAM_017250__ 1 ATGAGTGATAACATTCGCCGCTCAATGCCTTTATTTCCAATTGGGATTGT 50
BSNT_02801___ 51 CATGCAGTTAACTGAGTTATCAGCAAGACAAATTCGATATTATGAGGAGA 100
||||||||||||.||..|.||.||..|.||||||||||||||||||||.|
RBAM_017250__ 51 CATGCAGTTAACAGAACTTTCTGCCCGGCAAATTCGATATTATGAGGAAA 100
BSNT_02801___ 101 ATGGACTGATATTTCCAGCCAGAAGTGAAGGGAATAGACGATTATTTTCA 150
|||||.|||||||||||||.|||||.|||||.||||||||||||||||||
RBAM_017250__ 101 ATGGATTGATATTTCCAGCGAGAAGCGAAGGAAATAGACGATTATTTTCA 150
BSNT_02801___ 151 TTTCATGATGTAGATAAACTGTTAGAAATCAAGCACCTGATAGAACAAGG 200
||.|||||||||||||||||||||||||||||..|.|||||.||||||||
RBAM_017250__ 151 TTCCATGATGTAGATAAACTGTTAGAAATCAAAAATCTGATTGAACAAGG 200
BSNT_02801___ 201 TGTAAACATGGCAGGAATTAAACAGATTCTGGCGAAAGCCGAAGCCGAGC 250
.||.||.|||||.||.||.|||||.|||||||..||.||....|||||.|
RBAM_017250__ 201 CGTCAATATGGCGGGGATCAAACAAATTCTGGATAAGGCATCTGCCGAAC 250
BSNT_02801___ 251 CAGAACAAAAA-CAAAACGAGAAGACGAAAAAACCAATGAAACATGATCT 299
|.|||.||||| | |||.||.||....|||||.|||||.||..||||
RBAM_017250__ 251 CGGAAGAAAAATC----CGAAAAAACCGCCAAACCGATGAAGCACAATCT 296
BSNT_02801___ 300 GTCCGATGACGAACTGAGACAGCTCCTGAAAAACGAGCTCATGCAAGCCG 349
|||.|||||||||||.|||.||||.|||||||||||.||.|||||.||.|
RBAM_017250__ 297 GTCTGATGACGAACTCAGAAAGCTTCTGAAAAACGAACTGATGCAGGCAG 346
BSNT_02801___ 350 GCCGTTTTCAAAGAGGGAATACATTCCGTCAAGGCGACATGTCCCGCTTC 399
|||||||.||..|.||.|||||.|||||.|||||.|||||||||||.|||
RBAM_017250__ 347 GCCGTTTCCAGCGGGGAAATACTTTCCGCCAAGGTGACATGTCCCGATTC 396
BSNT_02801___ 400 TTTCATTAA 408
|||||||||
RBAM_017250__ 397 TTTCATTAA 405
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