Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02800 and RBAM_017240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_02800___ynbB.1.9828.seq
# -bsequence dna-align/RBAM_017240___ynbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02800___ynbB-RBAM_017240___ynbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02800___ynbB-RBAM_017240___ynbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02800___ynbB
# 2: RBAM_017240___ynbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1272
# Identity: 998/1272 (78.5%)
# Similarity: 998/1272 (78.5%)
# Gaps: 12/1272 ( 0.9%)
# Score: 3841.0
#
#
#=======================================
BSNT_02800___ 1 ATGTTTGACACATTAACACACGGAGAATTATTGAAGAAAACGGC--AATG 48
||||||||||||.|.||.|||||.|...|.||..|.|||||.|| ||
RBAM_017240__ 1 ATGTTTGACACACTGACCCACGGCGCTCTTTTACAAAAAACCGCCGAA-- 48
BSNT_02800___ 49 GAAGTGGAAGCGGACATTGCCGGCATTCATAAACAAATAGAAGAAATCAG 98
|||...||||||||.||..|||.|.||||||||..|||||||||||||||
RBAM_017240__ 49 GAAACAGAAGCGGAAATCTCCGCCGTTCATAAAAGAATAGAAGAAATCAG 98
BSNT_02800___ 99 CGAGCGAAATGAGTGGAGAGTGCTTCAAAGCTATAGAAAACACAAAGTAA 148
.||.||.|||||.||||||||.||.||||||||.||||||||.|||||||
RBAM_017240__ 99 TGAACGGAATGAATGGAGAGTCCTGCAAAGCTACAGAAAACATAAAGTAA 148
BSNT_02800___ 149 GCGACACTCATTTCATGCCGTCTACTGGATACGGCTATGATGATATCGGA 198
||||.||.|||||.|.|||.||.||.||||||||.|||||||||||||||
RBAM_017240__ 149 GCGATACGCATTTTACGCCTTCAACCGGATACGGTTATGATGATATCGGA 198
BSNT_02800___ 199 AGAGACACGCTTGA-AAGCATATATGCGGATGTGTTTGGCGGAGAAGCGG 247
.||||.||.||.|| ||| ||.|||||.||||||||.||.|||||.||||
RBAM_017240__ 199 CGAGATACACTGGAGAAG-ATCTATGCTGATGTGTTCGGAGGAGAGGCGG 247
BSNT_02800___ 248 GGCTTGTAAGGCCGCAAATCATTTCAGGCACACATGCGATCTCAATTGCT 297
|.||.||..||||||||||||||||.||.||.||||||||.|||||.||.
RBAM_017240__ 248 GACTCGTGCGGCCGCAAATCATTTCCGGAACGCATGCGATTTCAATCGCG 297
BSNT_02800___ 298 TTGTTCGGTGTCCTCAGACCGGGGGACGAGCTCCTTTATATCACGGGCAA 347
.|.||||||||.||.|||||.||||||||..|.|||||||||||.|||||
RBAM_017240__ 298 CTCTTCGGTGTGCTGAGACCCGGGGACGAATTGCTTTATATCACAGGCAA 347
BSNT_02800___ 348 GCCGTATGATACGCTAGAGGAAATTGTGGGCGTCAGGGGTGGAGAAAACG 397
|||.||.|||||.||.||||||||.||.||.||.||.||.||.||..|..
RBAM_017240__ 348 GCCTTACGATACACTCGAGGAAATCGTCGGAGTAAGAGGCGGGGAGTATT 397
BSNT_02800___ 398 CTGGATCGTTAAAGGATTTTCAAATCGGCTATAATGCGGTTGATCTGACG 447
|.||.|||.|.|||||.|||||||||||.||.|||||.||.|||.|.||.
RBAM_017240__ 398 CAGGCTCGCTTAAGGAATTTCAAATCGGATACAATGCAGTCGATTTAACA 447
BSNT_02800___ 448 AAAGACGGAAAGA-TAGACTATGATGCAGTCGCCGCTGCGATCAATCCGA 496
..|||.|| .||| |.||||.|||.||.|||...|||||.|||.|.||||
RBAM_017240__ 448 TCAGAAGG-CAGAGTGGACTTTGAAGCGGTCCGGGCTGCAATCCAGCCGA 496
BSNT_02800___ 497 AGACAAAAGTAATCGGCATTCAGCGCTCAAAAGGATATGCGAATCGCCCT 546
|.||||||||.||||||||.|||||.||||||||||||||||||||.||.
RBAM_017240__ 497 ATACAAAAGTGATCGGCATCCAGCGTTCAAAAGGATATGCGAATCGTCCG 546
BSNT_02800___ 547 TCTTTCTTAATTAGTGAAATAAAAGAAATGATCCGTTTTGTAAAAGAAGT 596
||||||..|||.|.||||||..||||.|||||.|||||.|||||.|||.|
RBAM_017240__ 547 TCTTTCAGAATAAATGAAATTGAAGAGATGATTCGTTTCGTAAAGGAAAT 596
BSNT_02800___ 597 CAATGAAAACCTGATCGTCTTTGTGGACAACTGTTACGGAGAATTTGTGG 646
|||.|||.|..|.||.||.|||||||||||.||.|||||||||||||..|
RBAM_017240__ 597 CAAAGAAGATGTCATTGTTTTTGTGGACAATTGCTACGGAGAATTTGCAG 646
BSNT_02800___ 647 AAGAGCTTGAGCCATGCCATGTTGGAGCCGATCTGATGGCGGGATCTCTC 696
||||||..||.||.|||||.||.|||||.|||||.|||||.||.||.||.
RBAM_017240__ 647 AAGAGCGGGAACCCTGCCACGTCGGAGCGGATCTTATGGCCGGCTCCCTG 696
BSNT_02800___ 697 ATTAAAAATCCCGGCGGCGGCCTTGCGAAAACAGGCGGCTACCTCGTCGG 746
||.|||||.||.||||||||||||||.|||||.||||||||.||.||.||
RBAM_017240__ 697 ATCAAAAACCCGGGCGGCGGCCTTGCTAAAACGGGCGGCTATCTTGTAGG 746
BSNT_02800___ 747 AAAAGCGAAATGGATTGAAGCTTGCTCATACCGTATGACGTCACCTGGCA 796
.|||||.||.||||||||.||.|||||.|||||.|||||.||.||.||.|
RBAM_017240__ 747 GAAAGCCAAGTGGATTGAGGCCTGCTCTTACCGGATGACCTCCCCGGGAA 796
BSNT_02800___ 797 TCGGCAGAGAAGCGGGGGCATCTCTTTACTCGCTCCAAGAAATGTACCAA 846
||||.||.|||||.||.||.||.||.||.||.||.||.||||||||.|||
RBAM_017240__ 797 TCGGAAGTGAAGCCGGCGCTTCGCTCTATTCACTGCAGGAAATGTATCAA 846
BSNT_02800___ 847 GGCTTCTTTTTGGCGCCTCACGTTGTGTCTCAAAGTTTAAAGGGAGCGGT 896
||.||||||.|.||.||.||.||.|||.|.|||||.||.|||||||||||
RBAM_017240__ 847 GGTTTCTTTCTCGCTCCGCATGTAGTGGCGCAAAGCTTGAAGGGAGCGGT 896
BSNT_02800___ 897 GTTTACAGCGAGATTCCTTGAAAAACTCGGCTTCACTTCAAACCCGAAAT 946
.|||||.||..|.||.||||||||.||||||||.||.||||||||...||
RBAM_017240__ 897 ATTTACCGCCCGTTTTCTTGAAAAGCTCGGCTTTACGTCAAACCCTGCAT 946
BSNT_02800___ 947 GGGATGCGAAAAGAACGGACTTAATACAATCCGTTGAGTTTTCA-GACAG 995
||.|||||...||||||||..|.||.|||||.|||||| ||||| |||..
RBAM_017240__ 947 GGAATGCGCCGAGAACGGATCTGATTCAATCAGTTGAG-TTTCAGGACCC 995
BSNT_02800___ 996 AGAAAAGATGATTGCTTTTTGCCAGGCTATTCAATTTGCATCGCCAATCA 1045
.||.||||||||.||||||||||||||.||.||||.|||.||.||.||.|
RBAM_017240__ 996 TGATAAGATGATCGCTTTTTGCCAGGCGATACAATATGCTTCACCGATTA 1045
BSNT_02800___ 1046 ATGCTCATGTGACGCCTTATCC-AGCCTACATGCCGGGATACGAGGATGA 1094
||||.||||||||||||||||| || |||.|||||||||||.||.||.||
RBAM_017240__ 1046 ATGCGCATGTGACGCCTTATCCGAG-CTATATGCCGGGATATGAAGACGA 1094
BSNT_02800___ 1095 TGTCATTATGGCAGCAGGCACGTTTATTCAAGGAGCAAGCATCGAATTAT 1144
|||||||||||||||.|||||.||..|.||.|||||||||||.|||||||
RBAM_017240__ 1095 TGTCATTATGGCAGCGGGCACTTTCGTACAGGGAGCAAGCATTGAATTAT 1144
BSNT_02800___ 1145 CAGCTGATGGCCCTATCCGCCCGCCGTATGTAGCGTATGTTCAGGGAGGA 1194
||||.|||||.||||||.|.|||||.|||||.||||||||.||.||||||
RBAM_017240__ 1145 CAGCAGATGGACCTATCAGACCGCCTTATGTCGCGTATGTCCAAGGAGGA 1194
BSNT_02800___ 1195 TTGACCTATTCGCATGTGAAGAATGCCATATGCAGTGCAGTGGATTCATT 1244
||.|||||..||||.|||||.|||||.||.|||||.||.||..||.|.||
RBAM_017240__ 1195 TTAACCTACGCGCACGTGAAAAATGCGATTTGCAGCGCCGTAAATGCTTT 1244
BSNT_02800___ 1245 GATGGAAAAGCAATTAATTTAA 1266
.||||||||..|..|.|||||.
RBAM_017240__ 1245 AATGGAAAAAGAGCTGATTTAG 1266
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