Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02798 and RBAM_017220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_02798___spoVK.1.9828.seq
# -bsequence dna-align/RBAM_017220___spoVK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02798___spoVK-RBAM_017220___spoVK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02798___spoVK-RBAM_017220___spoVK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02798___spoVK
# 2: RBAM_017220___spoVK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity: 779/974 (80.0%)
# Similarity: 779/974 (80.0%)
# Gaps: 16/974 ( 1.6%)
# Score: 3104.5
#
#
#=======================================
BSNT_02798___ 1 TTGGAGCGCGCTGTGACTTATAAAAACAACGGACAGATCAACATTATTCT 50
||||||||||||||.||.||||||||.||||||||.||.|||||.|||||
RBAM_017220__ 1 TTGGAGCGCGCTGTAACCTATAAAAATAACGGACAAATTAACATCATTCT 50
BSNT_02798___ 51 GAACGGGCAAAAGCAGGTGCTGACGAATGCTGAGGCAGAAGCGGAATATC 100
.||.||.||||||||.||||||||.|||||.||.||.||.||||||||||
RBAM_017220__ 51 TAATGGCCAAAAGCAAGTGCTGACAAATGCGGAAGCTGAGGCGGAATATC 100
BSNT_02798___ 101 AGGCTGCATTGCAAAAAAACGAAGCAAAGCACGGCATTTTGAAGGAAATC 150
||||.||..||||||||||.|||||.||.|||.|||||.||||.|||||.
RBAM_017220__ 101 AGGCCGCCCTGCAAAAAAATGAAGCCAAACACAGCATTCTGAAAGAAATT 150
BSNT_02798___ 151 GAAAAAGAAATGAGCGCATTAGTTGGGATGGAGGAAATGAAACGCAACAT 200
|||||||||||||.|.|||||||.||.|||||.|||||||||||||||||
RBAM_017220__ 151 GAAAAAGAAATGAACACATTAGTGGGTATGGAAGAAATGAAACGCAACAT 200
BSNT_02798___ 201 CAAGGAAATATACGCTTGGATTTTTGTGAACCAAAAACGCGCGGAGCAAG 250
.||.|||||.|||||.|||||.||.||.|||||||||||.||.||.||||
RBAM_017220__ 201 TAAAGAAATTTACGCGTGGATATTCGTCAACCAAAAACGGGCCGAACAAG 250
BSNT_02798___ 251 GCTTGAAGGTTGGAAAGCAAGCGCTGCACATGATGTTTAAAGGAAATCCG 300
|..||||.||.|||||.|||||.||.||.||||||||.|||||.||.||.
RBAM_017220__ 251 GGCTGAAAGTCGGAAAACAAGCTCTTCATATGATGTTCAAAGGGAACCCC 300
BSNT_02798___ 301 GGAACGGGAAAAACGACGGTTGCACGGCTCATCGGCAAGCTGTTCTTTGA 350
||.||.||.|||||.||.||.||..|.||.|||||||||||.|||||.||
RBAM_017220__ 301 GGCACCGGGAAAACTACCGTCGCGAGACTGATCGGCAAGCTTTTCTTCGA 350
BSNT_02798___ 351 AATGAATGTCCTGTCAAAAGGCCACTTAATAGAAGCGGAGCGGGCTGACC 400
||||||.||.||.||.|||||.||..|.||.||||||||.||.|||||.|
RBAM_017220__ 351 AATGAACGTGCTTTCCAAAGGACATCTGATCGAAGCGGAACGTGCTGATC 400
BSNT_02798___ 401 TGGTCGGGGAGTATATCGGACATACCGCCCAAAAGACGAGAGATTTAATC 450
|||||||.||.||.||||||||.||.||.|||||.|||||||||.|.||.
RBAM_017220__ 401 TGGTCGGTGAATACATCGGACACACGGCGCAAAAAACGAGAGATCTGATT 450
BSNT_02798___ 451 AAAAAGTCATTAGGTGGCATTTTGTTTATAGACGAAGCCTACTCGCTGGC 500
|||||.||..|.||.||||||||.||.||.||.|||||.|||||.||.||
RBAM_017220__ 451 AAAAAATCGCTCGGGGGCATTTTATTCATTGATGAAGCATACTCACTTGC 500
BSNT_02798___ 501 AAGAGGCGGCGAAAAGGACTTTGGGAAAGAAGCGATCGACACACTTGTAA 550
|||.|||||.||||||||.||.||.|||||.|||||.||.||.|||||.|
RBAM_017220__ 501 AAGGGGCGGAGAAAAGGATTTCGGTAAAGAGGCGATTGATACGCTTGTCA 550
BSNT_02798___ 551 AGCATATGGAAGACAAACAGCATGAGTTTATTTTGATACTCGCCGGATAT 600
|||||||||||||||||||||||||.||||||.||||.||.||.||.||.
RBAM_017220__ 551 AGCATATGGAAGACAAACAGCATGAATTTATTCTGATCCTGGCAGGGTAC 600
BSNT_02798___ 601 TCACGGGAAATGGATCATTTTCTCTCGTTAAATCCCGGACTCCAATCAAG 650
||..|.||||||...|||||.||.||.|||||||||||.||.|||||..|
RBAM_017220__ 601 TCGAGAGAAATGACACATTTCCTGTCATTAAATCCCGGCCTGCAATCGCG 650
BSNT_02798___ 651 ATTTCCC-ATCTCCATTGATTTTCCGGATTACTCTGTGACCCAGCTCATG 699
|||||| |||..|||.||.|||||||||||||||||.||.|||||.|||
RBAM_017220__ 651 -TTTCCCTATCAGCATCGACTTTCCGGATTACTCTGTCACTCAGCTGATG 699
BSNT_02798___ 700 GAGATTGCGAAACGAATGATCGATGAAAGGGAATACCAGCTCAGTCAAGA 749
||.||.||.||.||.|||||.|..||..||||.||.||..|.||.||.||
RBAM_017220__ 700 GACATCGCAAAGCGCATGATAGCAGAGCGGGAGTATCAATTAAGCCAGGA 749
BSNT_02798___ 750 AGCTGAATGGAAATTGAAAGATTACTTAATGACAGTGAAAAGCACGACAA 799
|||.||.|||||.||.||||||||||||||||||||||||||||||||||
RBAM_017220__ 750 AGCCGAGTGGAAGTTAAAAGATTACTTAATGACAGTGAAAAGCACGACAA 799
BSNT_02798___ 800 GTCCCATTAAATTCAGCAATGGACGTTTTGTCAGAAATGTGATCGAAAAA 849
|.|||||||||||||||||.||.||.|||||||||||.|||||.||||||
RBAM_017220__ 800 GCCCCATTAAATTCAGCAACGGGCGCTTTGTCAGAAACGTGATTGAAAAA 849
BSNT_02798___ 850 TCGATCAGAGCACAAGCCATGAGGCTTTTAATGGGAGACCAATACTTAAA 899
||.|||.|.||.||.||||||||.||||||||||||||||||||||||||
RBAM_017220__ 850 TCAATCCGCGCTCAGGCCATGAGACTTTTAATGGGAGACCAATACTTAAA 899
BSNT_02798___ 900 AAGCGACTTGATGACCATCAAAAGCCAAGAT---CTTTCCATTAAAGAAG 946
||.|||.||.|||||.|||||.|||||.||| ||| ||.|||||.|
RBAM_017220__ 900 AAACGATTTAATGACGATCAAGAGCCAGGATTTACTT---ATAAAAGATG 946
BSNT_02798___ 947 AAGCATCTGG-ATCT---GCATAG 966
|.|| || |.|| |.||||
RBAM_017220__ 947 AGGC----GGCAGCTCACGAATAG 966
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