Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02797 and RBAM_017210

See Amino acid alignment / Visit BSNT_02797 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:45
# Commandline: needle
#    -asequence dna-align/BSNT_02797___cwlC.1.9828.seq
#    -bsequence dna-align/RBAM_017210___cwlC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02797___cwlC-RBAM_017210___cwlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02797___cwlC-RBAM_017210___cwlC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02797___cwlC
# 2: RBAM_017210___cwlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity:     568/793 (71.6%)
# Similarity:   568/793 (71.6%)
# Gaps:          59/793 ( 7.4%)
# Score: 1948.5
# 
#
#=======================================

BSNT_02797___      1 ATGGTTAAAATTTTTATTGATCCTGGCCATGGCGGGTCTGATCCAGGCGC     50
                     |||||||||||||||||.||.||.||.||||||||..|||||.||||.||
RBAM_017210__      1 ATGGTTAAAATTTTTATAGACCCCGGTCATGGCGGAACTGATTCAGGTGC     50

BSNT_02797___     51 AACAGGTAATGGCCTTCAGGAAAAAACGTTAACCCTGCAAATCGCTTTAG    100
                     |||.||.||.||.||||||||||||.||.|.||.|||.|.|||||..|.|
RBAM_017210__     51 AACCGGAAACGGACTTCAGGAAAAAGCGGTCACGCTGGAGATCGCGCTGG    100

BSNT_02797___    101 CCTTACGTACGATATTAACTAATGAATATGAAGGCGTTTCTCTGCTGCTG    150
                     |.||.||.|||||..|.||.|||||.||||||||.||||||.|...|.||
RBAM_017210__    101 CTTTGCGCACGATTCTGACGAATGAGTATGAAGGAGTTTCTGTCACGATG    150

BSNT_02797___    151 AGCCGGACAAGCGACCAATA-TGTCAGCTTAAACGACCG-GACAA---AT    195
                     |||.|||||||||| .||.| .||||||.|    |||.| ||.||   ||
RBAM_017210__    151 AGCAGGACAAGCGA-TAAGACAGTCAGCCT----GACGGAGAGAACGGAT    195

BSNT_02797___    196 GCCGCAAATAACTGGGGAGCAGATTTCTTTTTGTCCATTCACGTTAATTC    245
                     |||||.||.|.||||||.|||||||..|||||.||||||||..||||.||
RBAM_017210__    196 GCCGCCAACAGCTGGGGCGCAGATTATTTTTTATCCATTCATATTAACTC    245

BSNT_02797___    246 CGGGGGAGGCACAGGTTTTGAAAGCTATATTTATCCAGATGTAGGAGCCC    295
                     .||.||.||.||.||.||.||||||||||||||.||.|.|||.|||||.|
RBAM_017210__    246 AGGAGGCGGAACCGGATTCGAAAGCTATATTTACCCCGGTGTCGGAGCGC    295

BSNT_02797___    296 CGACGACGACTTATCAATCGACAATTCACTCTGAAGTGATACAAGCTGTC    345
                     ||||..|||||||.|||||..|..|.|||.|..|||||||.||||| .||
RBAM_017210__    296 CGACCTCGACTTACCAATCAGCCGTCCACACGCAAGTGATTCAAGC-ATC    344

BSNT_02797___    346 GACTTT-----GCCGATCGCGGCAAAAAAACAGCGAACTTCCACGTCCTA    390
                     |..|||     .||||    ||.|||||||||||.||||||||.||.||.
RBAM_017210__    345 GGGTTTTAATGACCGA----GGAAAAAAAACAGCCAACTTCCATGTGCTG    390

BSNT_02797___    391 AGGGAGTCGGCAATGCCTGCCCTCTTGACCGAGAACGGCTTCATTGATAC    440
                     .|||||.|....|||||.||..|.|||||.|||||.||.||..|||||| 
RBAM_017210__    391 CGGGAGACAAGTATGCCGGCGATTTTGACGGAGAATGGTTTTGTTGATA-    439

BSNT_02797___    441 CGT-TTCCGATGCAAATAAGCTGAAAACGAG-CAGTTTTATTCAAAGCTT    488
                     ||| ..|.||||||||.||.|||||||| || ||||||||||.|||||.|
RBAM_017210__    440 CGTCAGCTGATGCAAACAAACTGAAAAC-AGCCAGTTTTATTGAAAGCCT    488

BSNT_02797___    489 AGCGAGAGGACATGCAAACGGGC-TGGAGCAAGCCTT-----TAACCTTA    532
                     .||.|||||||||||.|| |||| ||||||||||.||     |||  ..|
RBAM_017210__    489 TGCAAGAGGACATGCCAA-GGGCTTGGAGCAAGCTTTCGGTCTAA--AAA    535

BSNT_02797___    533 AAAAGACTTCCAGCTTAGGGTTATATAAGGTTCAAATCGGCGCATTTAAA    582
                     |||||.||         |..||||||||.||.||||||||.|||||.|||
RBAM_017210__    536 AAAAGGCT---------GACTTATATAAAGTGCAAATCGGTGCATTCAAA    576

BSNT_02797___    583 GTCAAAGCGAATGCCGACTCGCTCGCAAGTAAAGCCGAAG------CCAA    626
                     ||.|||||.|||||.||..||||.||      .|||||.|      |.||
RBAM_017210__    577 GTGAAAGCAAATGCTGATGCGCTTGC------CGCCGATGCGGAGTCTAA    620

BSNT_02797___    627 AGGTTTTGACTCGATTGTCCTTTTAAAGGACGGATTATACAAAGTGCAGA    676
                     ||||||||||.|||||||.|||..|||.|.|||.||||..||||||||||
RBAM_017210__    621 AGGTTTTGACGCGATTGTGCTTCCAAAAGGCGGCTTATTTAAAGTGCAGA    670

BSNT_02797___    677 TTGGCGCATTTTCATCCAAAGACAATGCAGACACCCTGGCTG-TCAGAGC    725
                     |.||||||||.||.||||.|||..|.||.||..|..||||.| .|.|..|
RBAM_017210__    671 TCGGCGCATTCTCTTCCAGAGATTACGCTGAAGCGTTGGCCGCGCGGGCC    720

BSNT_02797___    726 GAAAAATGCCGGCTTTGACGCTATTGTGATCCTAGAATCATAG    768
                     |||||| |||||.|||||.||..|..|.||.|.|||.|.|   
RBAM_017210__    721 GAAAAA-GCCGGATTTGATGCCTTCATTATGCAAGACTAA---    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02797 and RBAM_017210

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
