Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02796 and RBAM_017200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_02796___ymaB.1.9828.seq
# -bsequence dna-align/RBAM_017200___ymaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02796___ymaB-RBAM_017200___ymaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02796___ymaB-RBAM_017200___ymaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02796___ymaB
# 2: RBAM_017200___ymaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 636
# Identity: 469/636 (73.7%)
# Similarity: 469/636 (73.7%)
# Gaps: 30/636 ( 4.7%)
# Score: 1658.5
#
#
#=======================================
BSNT_02796___ 1 ATGGGAAAAATGGACGAAATGATTTTAGTTGCCCCGCGCGA-TGATGTGT 49
|||...||||||||.|||||.||.||.|.|||.||||| || |||.||.|
RBAM_017200__ 1 ATGAATAAAATGGATGAAATCATCTTGGCTGCACCGCG-GAGTGACGTCT 49
BSNT_02796___ 50 TTAAGAAAGAAA-GCTTAACCTTCCAGGGCGTGTACAGTGAAGATAGCAG 98
||.|.||.|||| || |.||.||.|||||.||..||||.||.||| |
RBAM_017200__ 50 TTCAAAACGAAATGC-TGACATTTCAGGGAGTCAACAGCGAGGAT----G 94
BSNT_02796___ 99 A--GTAGCCGAA--ATCATGGCTCAGATTGAAGCGGCCTATCGTGAAATG 144
| |||.|..|| ||.||||||||.|||||.|||...|.|..||||||.
RBAM_017200__ 95 AACGTATCGTAAACATTATGGCTCAAATTGAGGCGCATTTTTTTGAAATC 144
BSNT_02796___ 145 AGAAGAGGGGACGCAGAAGAAGATCCGCGTTTCAAGCAGCCGATACCTTA 194
||||||||.|||||.|||||.||.|||||.||.||.||||||||.||.||
RBAM_017200__ 145 AGAAGAGGCGACGCGGAAGAGGACCCGCGATTTAAACAGCCGATTCCGTA 194
BSNT_02796___ 195 TGTCGTCATTAAGCGTGAAGATGAAGTTTTTCTTTACGAGCGGCTGGCTG 244
|||||||||....||.||.|||||.||.|||.|.||.||.|||||.||.|
RBAM_017200__ 195 TGTCGTCATCCGCCGCGATGATGAGGTGTTTGTGTATGAACGGCTTGCGG 244
BSNT_02796___ 245 GCGGCGGTGAATCACGACTGCACAACAAGCTTTCTCTCGGCTTTGGCGGT 294
||||.||.|||||.||.||.||.||.|||||||||||||||||.|||||.
RBAM_017200__ 245 GCGGAGGGGAATCGCGCCTCCATAATAAGCTTTCTCTCGGCTTCGGCGGA 294
BSNT_02796___ 295 CATATGAACGCCATCGAAGGGGCAGCTTCATTTGCTGAAGT-CTTAAAGC 343
||.||||||.|.||.||||||||.|||||||||.|.||||| ||.||| |
RBAM_017200__ 295 CACATGAACCCTATGGAAGGGGCGGCTTCATTTTCGGAAGTGCTGAAA-C 343
BSNT_02796___ 344 TGAACACAGACCGTGAGCTTGAGGAAGAACTGCAAATAAAT----GAAGA 389
.|||.||.|||||.|||||.|.|||||||||| ||.|| ||.||
RBAM_017200__ 344 AGAATACCGACCGGGAGCTGGCGGAAGAACTG----TACATTCGCGAGGA 389
BSNT_02796___ 390 AGATAAACAGGCGATTGTCACACTGGGATTGATCAATGATGATGAAAATA 439
.||.|||||....|||||||||||.||..|||||||||||||||||||..
RBAM_017200__ 390 GGACAAACAAAACATTGTCACACTCGGCCTGATCAATGATGATGAAAACG 439
BSNT_02796___ 440 GTGTTGGCAAAGTGCATATCGGTATTCTTTCTGCGCTTCAATTAAAGCCT 489
.|||.||.||.|||||||||||.||.|||||||||||.||.|||..|.||
RBAM_017200__ 440 ATGTAGGGAAGGTGCATATCGGCATCCTTTCTGCGCTCCAGTTAGCGTCT 489
BSNT_02796___ 490 GGCGCACAAGTGGAAGTGAAGGAGAAAGAACAAATTGCGGGTAAATGGAT 539
|..||||||||.||||||||.||.|||||.|||||.||.||....|||||
RBAM_017200__ 490 GCGGCACAAGTCGAAGTGAAAGAAAAAGATCAAATCGCCGGGCGCTGGAT 539
BSNT_02796___ 540 GAAAGTTTCT----GAATTAAAACAGGATGACATCTACAACCGTCTGGAA 585
|||| || |||.|.|||.||||..|..|.||..|.|||||.|||
RBAM_017200__ 540 GAAA----CTGAGCGAACTGAAAGAGGAAAATGTGTATCAGCGTCTTGAA 585
BSNT_02796___ 586 ACATGGTCACAGTTTGTTGTTGATATTCTTGAATAA 621
.|.|||||.||||||||.|..|||||.|||.|||||
RBAM_017200__ 586 GCTTGGTCTCAGTTTGTCGCCGATATACTTCAATAA 621
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