Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_02788 and RBAM_017130

See Amino acid alignment / Visit BSNT_02788 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_02788___miaA.1.9828.seq
#    -bsequence dna-align/RBAM_017130___miaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02788___miaA-RBAM_017130___miaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02788___miaA-RBAM_017130___miaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02788___miaA
# 2: RBAM_017130___miaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 962
# Identity:     719/962 (74.7%)
# Similarity:   719/962 (74.7%)
# Gaps:          34/962 ( 3.5%)
# Score: 2609.0
# 
#
#=======================================

BSNT_02788___      1 TTGAATAATACGAAGCAGCCCGTTGTCATTTTAGTCGGACCGACGGCAGT     50
                     |||||.||||..||.|||||.||.|||||..|.|||||||||||||||||
RBAM_017130__      1 TTGAAAAATAAAAAACAGCCTGTCGTCATACTTGTCGGACCGACGGCAGT     50

BSNT_02788___     51 GGGGAAAACCAATTTAAGTATTCAG-CTAGC-CAAATCCTTAAACGCAGA     98
                     .||.|||||.||..||||.| ||.| ||.|| .||||.| |.||.||.||
RBAM_017130__     51 CGGAAAAACAAAACTAAGCA-TCGGACTCGCGAAAATGC-TGAATGCGGA     98

BSNT_02788___     99 AATTATCAGCGGAGATTCGATGCAGATTTATAAAGGGATGGATATTGGAA    148
                     |||.||||||||||||||.||||||.|.||||||||||||||.||.||||
RBAM_017130__     99 AATCATCAGCGGAGATTCCATGCAGGTATATAAAGGGATGGACATCGGAA    148

BSNT_02788___    149 CAGCTAAAATTACCGAACAGGAGATGGAGGGAGTGCCCCATCATCTGATT    198
                     |.||.|||.|.||||||.|.||||..||.||.|||||.|||||.||||||
RBAM_017130__    149 CGGCCAAAGTCACCGAAGAAGAGACAGAAGGCGTGCCGCATCACCTGATT    198

BSNT_02788___    199 GACATTTTAGATCC--CCAAGACTCTTTCTCTACTGCCGATTATCAAAGC    246
                     ||.|||||.||.||  ||  |||.||||.||.||.||.||||||||.|..
RBAM_017130__    199 GATATTTTGGAGCCGTCC--GACACTTTTTCAACGGCGGATTATCAGAAA    246

BSNT_02788___    247 TTAGTAAGAAATAAAATCAGCGAGATTGCAAATAGAGGAAAGCTTCCGAT    296
                     .|.|||||....|||||||.|||||||||..|||||||||||||.|||||
RBAM_017130__    247 ATGGTAAGGGGAAAAATCACCGAGATTGCCGATAGAGGAAAGCTGCCGAT    296

BSNT_02788___    297 GATTGTCGGTGGTACAGGGCTTTATATACAATCTGTGCTTTACGATTATA    346
                     |||||||||.||.||.||.||.||.||.||.||.|||||.||.||.||||
RBAM_017130__    297 GATTGTCGGGGGGACGGGTCTGTACATTCAGTCCGTGCTGTATGACTATA    346

BSNT_02788___    347 CATTTACGGAAGA----GGCAAATGATCCCGTGTTTCGAGAGAGCAT---    389
                     |.||.||||||.|    |||    ||.||.||.||.||.|||.||||   
RBAM_017130__    347 CGTTCACGGAAAACTCCGGC----GACCCTGTATTCCGGGAGCGCATGGA    392

BSNT_02788___    390 GCAAGTGGCCGCTGAGCGGGAAGGCGCTGACTTTCTTCATGCCAAACTTG    439
                     |.||.||||.|||||   .|||||.||.||....|||||||||||.||||
RBAM_017130__    393 GAAACTGGCGGCTGA---AGAAGGGGCGGAAGCGCTTCATGCCAAGCTTG    439

BSNT_02788___    440 CTGCAGCAGATCCCGAGGCAGCAGCTGCGATTCATCCGAATAATACAAGA    489
                     |.|||||.||.||.||.||.||.||.||.|||||||..||.|||||..||
RBAM_017130__    440 CGGCAGCCGACCCGGAAGCGGCGGCGGCCATTCATCAAAACAATACGCGA    489

BSNT_02788___    490 AGAGTCATTCGCGCACTGGAAATTTTACATACGTCTGGAAAAACGATGTC    539
                     ||||||||.|||||.||.|||||.||.|||...||.||||||||.|||||
RBAM_017130__    490 AGAGTCATCCGCGCGCTCGAAATCTTGCATGTATCGGGAAAAACAATGTC    539

BSNT_02788___    540 CCAGCATTTGAAGGAA--CAAAAACGAGAACTTCTGTACAATGCAGTGTT    587
                     ..|||||.|.||  ||  ||||||||.||.||.||.||||||||.||..|
RBAM_017130__    540 AGAGCATCTTAA--AACCCAAAAACGGGAGCTGCTTTACAATGCGGTTCT    587

BSNT_02788___    588 AATTGGCCTGACAATGGATAGAGACACGCTTTACGAAAGAATTAATCAGC    637
                     .||.||.||.||||||||.|||||...|||.||||...|.|||||..|||
RBAM_017130__    588 TATCGGTCTTACAATGGACAGAGAAGTGCTGTACGGCCGGATTAACGAGC    637

BSNT_02788___    638 GGGTCGATTTGATGATGGAGTCAGGCCTTCTTCCGGAAGTGAAACGCTTA    687
                     |.||.||..|||||.||||..|.|||||||||...|||||.||.||..|.
RBAM_017130__    638 GCGTTGACCTGATGCTGGAAACCGGCCTTCTTGACGAAGTAAAGCGGCTG    687

BSNT_02788___    688 TACGACAAGAACGTGAGAGACTGTCAATCAATACAGGCGATAGGCTATAA    737
                     ||.||.|.|||..|..|.|||.|.|||||.||.||||||||.||||||||
RBAM_017130__    688 TATGATATGAATATACGGGACAGCCAATCGATTCAGGCGATCGGCTATAA    737

BSNT_02788___    738 AGAGCTGTATGCATATTTTGACGGTTTTGTGACACTTTCCGATGCTGTCG    787
                     |||||||||||.||||.||||.|||...||..|.||..|..|.|||||.|
RBAM_017130__    738 AGAGCTGTATGAATATCTTGATGGTAAAGTCCCGCTCCCTCAGGCTGTGG    787

BSNT_02788___    788 AACAGCTAAAGCAGAACTCGAGGCGGTATGCGAAACGCCAGCTGACGTGG    837
                     ||||..||||.||.||.||.|||||.||||||||||||||||||||.|||
RBAM_017130__    788 AACAATTAAAACAAAATTCTAGGCGATATGCGAAACGCCAGCTGACCTGG    837

BSNT_02788___    838 TTTCGCAACAAAATGCAGGTCACATGGTTCGATATGACACCGCCTGTTGA    887
                     ||||||||.|||||||..||..|||||...||||||||.|||||||||||
RBAM_017130__    838 TTTCGCAATAAAATGCCCGTTTCATGGACAGATATGACGCCGCCTGTTGA    887

BSNT_02788___    888 TATGGAGCTGAAAAAAAAGGAAATTTTC----ACACATATAGCAGGAAAA    933
                     |||.||||.|||||||||||||||||||    .|    ||||||||||||
RBAM_017130__    888 TATTGAGCAGAAAAAAAAGGAAATTTTCGAGTGC----ATAGCAGGAAAA    933

BSNT_02788___    934 CTCGAACTTTAA    945
                     ||.|||.|||||
RBAM_017130__    934 CTGGAAATTTAA    945


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02788 and RBAM_017130

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
