Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02787 and RBAM_017120

See Amino acid alignment / Visit BSNT_02787 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_02787___ymaF.1.9828.seq
#    -bsequence dna-align/RBAM_017120___ymaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02787___ymaF-RBAM_017120___ymaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02787___ymaF-RBAM_017120___ymaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02787___ymaF
# 2: RBAM_017120___ymaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 425
# Identity:     306/425 (72.0%)
# Similarity:   306/425 (72.0%)
# Gaps:          40/425 ( 9.4%)
# Score: 1108.5
# 
#
#=======================================

BSNT_02787___      1 TTGGGCCTGTATCAGTCTGACTGGTCAAAAGCACCGCCCCACGCACATGC     50
                     .||||||||||||||||.||.|||||||||..|||.||.|||.||||.||
RBAM_017120__      1 GTGGGCCTGTATCAGTCCGATTGGTCAAAAAAACCTCCGCACACACACGC     50

BSNT_02787___     51 CTATC------------ATGTCAAAACAACGAGAGAACAGGGCCATTATC     88
                     .||.|            ||||            ||..|||||.|||||.|
RBAM_017120__     51 ATACCGGGCGGTTACGGATGT------------AGTGCAGGGGCATTACC     88

BSNT_02787___     89 ATCTCATTGAAGGGTTTACTCAGCCGGCAAACGGATCA--AATACCGATC    136
                     ||.|.||.|||||.|||.|.|||||||..|||||  ||  |||||.||||
RBAM_017120__     89 ATTTGATCGAAGGCTTTTCGCAGCCGGAGAACGG--CAGCAATACAGATC    136

BSNT_02787___    137 AGCATACACATTACTATACAGGGATCACTTCATTTGAAAACGGCCATTTT    186
                     ||||||||||||.||||||.||.|||||.||.||||||||||||||||||
RBAM_017120__    137 AGCATACACATTTCTATACGGGCATCACCTCGTTTGAAAACGGCCATTTT    186

BSNT_02787___    187 CATCGGTATTACGGAATCTCAGGGCCGGCGATTCCC-----TTAGCAGAT    231
                     |||.||||||||||.||.||.||.||.||.| ||||     ||    ||.
RBAM_017120__    187 CATAGGTATTACGGCATTTCCGGCCCTGCCA-TCCCGAGGGTT----GAC    231

BSNT_02787___    232 GGCACACATTATCATGAAATCGAAGAAACGACATATCTGGCTTATAACGA    281
                     ||.||||||||.|||||..|...|||.||.||.|.|...||.||.||.||
RBAM_017120__    232 GGAACACATTACCATGAGCTTTCAGAGACCACCTTTGCCGCCTACAATGA    281

BSNT_02787___    282 GCCGATTGAGATCCAGTACGGAGGGGTTGTGTACGATCC-CGGAGATGAC    330
                     |||||||.||||||||.||||.||.||.||.|||||||| ||| ||.||.
RBAM_017120__    282 GCCGATTCAGATCCAGCACGGCGGCGTCGTTTACGATCCGCGG-GAGGAA    330

BSNT_02787___    331 AGAAGAAAAACGCATCGTCATAACCTAAAAGGAAAGACAAGGGAAATTGT    380
                     .||.|.||||||||.||.||||..||.||||||||.||.||.||..||||
RBAM_017120__    331 GGACGGAAAACGCACCGCCATACACTCAAAGGAAAAACGAGAGAGGTTGT    380

BSNT_02787___    381 CGGCAATGAGCCGCTCGGCTGGTAG    405
                     |||.||.||||||.||||.||||||
RBAM_017120__    381 CGGAAACGAGCCGATCGGGTGGTAG    405


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