Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02787 and RBAM_017120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_02787___ymaF.1.9828.seq
# -bsequence dna-align/RBAM_017120___ymaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02787___ymaF-RBAM_017120___ymaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02787___ymaF-RBAM_017120___ymaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02787___ymaF
# 2: RBAM_017120___ymaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 425
# Identity: 306/425 (72.0%)
# Similarity: 306/425 (72.0%)
# Gaps: 40/425 ( 9.4%)
# Score: 1108.5
#
#
#=======================================
BSNT_02787___ 1 TTGGGCCTGTATCAGTCTGACTGGTCAAAAGCACCGCCCCACGCACATGC 50
.||||||||||||||||.||.|||||||||..|||.||.|||.||||.||
RBAM_017120__ 1 GTGGGCCTGTATCAGTCCGATTGGTCAAAAAAACCTCCGCACACACACGC 50
BSNT_02787___ 51 CTATC------------ATGTCAAAACAACGAGAGAACAGGGCCATTATC 88
.||.| |||| ||..|||||.|||||.|
RBAM_017120__ 51 ATACCGGGCGGTTACGGATGT------------AGTGCAGGGGCATTACC 88
BSNT_02787___ 89 ATCTCATTGAAGGGTTTACTCAGCCGGCAAACGGATCA--AATACCGATC 136
||.|.||.|||||.|||.|.|||||||..||||| || |||||.||||
RBAM_017120__ 89 ATTTGATCGAAGGCTTTTCGCAGCCGGAGAACGG--CAGCAATACAGATC 136
BSNT_02787___ 137 AGCATACACATTACTATACAGGGATCACTTCATTTGAAAACGGCCATTTT 186
||||||||||||.||||||.||.|||||.||.||||||||||||||||||
RBAM_017120__ 137 AGCATACACATTTCTATACGGGCATCACCTCGTTTGAAAACGGCCATTTT 186
BSNT_02787___ 187 CATCGGTATTACGGAATCTCAGGGCCGGCGATTCCC-----TTAGCAGAT 231
|||.||||||||||.||.||.||.||.||.| |||| || ||.
RBAM_017120__ 187 CATAGGTATTACGGCATTTCCGGCCCTGCCA-TCCCGAGGGTT----GAC 231
BSNT_02787___ 232 GGCACACATTATCATGAAATCGAAGAAACGACATATCTGGCTTATAACGA 281
||.||||||||.|||||..|...|||.||.||.|.|...||.||.||.||
RBAM_017120__ 232 GGAACACATTACCATGAGCTTTCAGAGACCACCTTTGCCGCCTACAATGA 281
BSNT_02787___ 282 GCCGATTGAGATCCAGTACGGAGGGGTTGTGTACGATCC-CGGAGATGAC 330
|||||||.||||||||.||||.||.||.||.|||||||| ||| ||.||.
RBAM_017120__ 282 GCCGATTCAGATCCAGCACGGCGGCGTCGTTTACGATCCGCGG-GAGGAA 330
BSNT_02787___ 331 AGAAGAAAAACGCATCGTCATAACCTAAAAGGAAAGACAAGGGAAATTGT 380
.||.|.||||||||.||.||||..||.||||||||.||.||.||..||||
RBAM_017120__ 331 GGACGGAAAACGCACCGCCATACACTCAAAGGAAAAACGAGAGAGGTTGT 380
BSNT_02787___ 381 CGGCAATGAGCCGCTCGGCTGGTAG 405
|||.||.||||||.||||.||||||
RBAM_017120__ 381 CGGAAACGAGCCGATCGGGTGGTAG 405
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