Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02785 and RBAM_017110

See Amino acid alignment / Visit BSNT_02785 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_02785.1.9828.seq
#    -bsequence dna-align/RBAM_017110___ebrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02785-RBAM_017110___ebrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02785-RBAM_017110___ebrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02785
# 2: RBAM_017110___ebrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 334
# Identity:     176/334 (52.7%)
# Similarity:   176/334 (52.7%)
# Gaps:          95/334 (28.4%)
# Score: 517.0
# 
#
#=======================================

BSNT_02785         0 --------------------------------------------------      0
                                                                       
RBAM_017110__      1 ATGATTCTGGGTTATATCTTCCTCACAATTGCTATTTTATCAGAGTCAAT     50

BSNT_02785         1 ----------ATGCTGAAAGTAT----CTGAT------GGCTTCAAAAAG     30
                               ||||||||.||.|    |.|||      ||.||       
RBAM_017110__     51 CGGCGCGGCCATGCTGAAGGTCTCCCGCGGATTTACGCGGTTT-------     93

BSNT_02785        31 TGGAAGCCAAGTGCTTTGGTCGT--CATTGGCTATTCCCTCGCCTTTTAT     78
                        ..|||.||.||..|.||.||  ||  ||||||||..|.|||||||||
RBAM_017110__     94 ---TTGCCGAGCGCGCTTGTAGTGGCA--GGCTATTCATTGGCCTTTTAT    138

BSNT_02785        79 ATGCTGTCCCTGACTTTAAACCATATTCCCCTCAGCCTCTCCTATGCGAC    128
                     |||||.||.|||||..|.||.|..|||||.||||||.|.||||||||.||
RBAM_017110__    139 ATGCTTTCACTGACACTGAATCTCATTCCGCTCAGCTTATCCTATGCAAC    188

BSNT_02785       129 TTGGAGCGGGGCGGGCACAGTGCTGACGACAGTGATCGGAGTAAAATGGT    178
                     .||||||||.||.||.||.|||||..|..|..|.|||||||..|||||||
RBAM_017110__    189 ATGGAGCGGAGCCGGAACGGTGCTCGCATCCATTATCGGAGCGAAATGGT    238

BSNT_02785       179 TCAAGGAAGATCTGAATGCCAA--AGGGC-TTATCGGGATTC-TTTTATT    224
                     |..|.|||.|.|||   |.|||  |||.| |.||| |||.|| ||||.||
RBAM_017110__    239 TTCATGAAAAACTG---GACAAGCAGGCCGTCATC-GGACTCTTTTTCTT    284

BSNT_02785       225 ACTATCAGGGGTCGTGTTACTTAATTGGCCGTAA    258
                     |.|..|.||.|||.|.||..|.||||||..|   
RBAM_017110__    285 ATTGGCCGGTGTCATTTTGATGAATTGGTAG---    315


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