Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02783 and RBAM_017090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_02783___ymaD.1.9828.seq
# -bsequence dna-align/RBAM_017090___ymaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02783___ymaD-RBAM_017090___ymaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02783___ymaD-RBAM_017090___ymaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02783___ymaD
# 2: RBAM_017090___ymaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 494
# Identity: 332/494 (67.2%)
# Similarity: 332/494 (67.2%)
# Gaps: 82/494 (16.6%)
# Score: 1183.0
#
#
#=======================================
BSNT_02783___ 1 ATGGCAGATCATCATTTTTATTTAAAAGCGAATTGGCCGGGTAACCGCAA 50
.|||||.|.|||||.|||||||||||.||.||||||||.||.||.|||||
RBAM_017090__ 1 TTGGCAAAACATCACTTTTATTTAAAGGCAAATTGGCCCGGAAATCGCAA 50
BSNT_02783___ 51 TGATGTCGGTACG--ATTGAAAGC--------GGAAAC--CTGATCACAT 88
|||.||||| || |||.||||| |||||| |||
RBAM_017090__ 51 TGACGTCGG--CGATATTAAAAGCGGCCGGCTGGAAACGGCTG------- 91
BSNT_02783___ 89 CGATTTCCATTCCTAAAGAAATGGATGGCCCGGGAGAAGGGACCAACCCA 138
|.|||||||||||.||||||||.||.||.||||||||.||.||.||.
RBAM_017090__ 92 ---TGTCCATTCCTAAGGAAATGGACGGACCCGGAGAAGGCACAAATCCT 138
BSNT_02783___ 139 GATGAAATGCTTCTCGGGGCGGCAGCGACCTGTTACATTATTACACTTGC 188
|||||||||||.||.||.|||||.|||||||||||.|||||.||.|||||
RBAM_017090__ 139 GATGAAATGCTGCTTGGAGCGGCCGCGACCTGTTATATTATAACGCTTGC 188
BSNT_02783___ 189 AGCGATGATGGAGAGAAGCGGGCTGGAAAAAGAAGACTTACAGATGGAGT 238
.|||||||||||.||||||||.|||||.||||||||..||||.|||||.|
RBAM_017090__ 189 GGCGATGATGGAAAGAAGCGGCCTGGATAAAGAAGATCTACATATGGAAT 238
BSNT_02783___ 239 CAGAAGGCATTGTCGACGTCACAAAAGGAGTCTTTACATACAAAAAGATC 288
|.|||||.|||||.||||||||.||.||.||.||.||.|||.|.||.|||
RBAM_017090__ 239 CTGAAGGAATTGTAGACGTCACGAACGGTGTGTTCACGTACCAGAAAATC 288
BSNT_02783___ 289 ATTCACCGTCCCTCTGTCGTGCTTAAA-CATGATGCTTCACAAGACG--- 334
||||||||.||.|.|.| .|..||||| |..|||||..| |.|.|||
RBAM_017090__ 289 ATTCACCGCCCGTTTAT-ATTATTAAAGCCGGATGCAGC-CGAAACGGAC 336
BSNT_02783___ 335 ---ACG-TCGC------ATTGGCGCACAAGCTTTGTAAAAAAGCGGAGTC 374
||| |||| .||.|||| |.|||||.|||||
RBAM_017090__ 337 TTTACGCTCGCCAGGAAGTTAGCGC------------ATAAAGCAGAGTC 374
BSNT_02783___ 375 GTCATGCATGATTTCGCGTGCAATTCAAGGAAATGTCGTGCTGCAGCTTG 424
.|||||.||||||||.||.||..|.||||||||.||.|.|.||.||||||
RBAM_017090__ 375 CTCATGTATGATTTCACGAGCGGTCCAAGGAAACGTGGAGATGGAGCTTG 424
BSNT_02783___ 425 AAGCCTCTGTGAAACTGGGTGGAGAATAA--------------- 453
| ||.||.||.|.||
RBAM_017090__ 425 A---------------GGTTGAAGTAAAAGCTGCCCGCGCTTGA 453
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