Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02780 and RBAM_017070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_02780.1.9828.seq
# -bsequence dna-align/RBAM_017070___aprX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02780-RBAM_017070___aprX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02780-RBAM_017070___aprX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02780
# 2: RBAM_017070___aprX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1352
# Identity: 892/1352 (66.0%)
# Similarity: 892/1352 (66.0%)
# Gaps: 202/1352 (14.9%)
# Score: 3177.0
#
#
#=======================================
BSNT_02780 0 -------------------------------------------------- 0
RBAM_017070__ 1 ATGTTTGGTTACTCAATGGTACAAATGGTGCGGTCAAATGCTCATAAGCT 50
BSNT_02780 0 -------------------------------------------------- 0
RBAM_017070__ 51 GGACTGGCCGCTCAGAGAAAACGTATTACAGTTATATAAACCTTTCAAAT 100
BSNT_02780 0 -------------------------------------------------- 0
RBAM_017070__ 101 GGACACCTTGCTTTTTGCACAAGTTTTTCGAAAAAAAGGTGAAAAACAGA 150
BSNT_02780 1 ------ATGTCAGTCATTATCGAATTTGAGGAAGGCTGTCACGAGACCGG 44
|||||||||||.||.||||||||.||.|||||.||.||..||||
RBAM_017070__ 151 AAGAAAATGTCAGTCATCATTGAATTTGAAGAGGGCTGCCATGAATCCGG 200
BSNT_02780 45 CTTTCAAATGGCTGGAGAGGTGCTGCAAAAAGAAAAACGCAGCAAGCT-A 93
.|||||.|...|.|||.||||..|...|||||||||||||.|||...| |
RBAM_017070__ 201 TTTTCACAGCACAGGACAGGTCTTATCAAAAGAAAAACGCTGCACCATAA 250
BSNT_02780 94 AAAAGCCGCTTCAACAAAATCAACTGCTGCAGCGCCGAGGTTACTCCTTC 143
||||||.|.||||| |.||||||.||||||||||||||.||.|||||.||
RBAM_017070__ 251 AAAAGCAGTTTCAA-ACAATCAATTGCTGCAGCGCCGAAGTCACTCCGTC 299
BSNT_02780 144 AG--CATTACATTCCCTTCTCTCTGAATGCAGCAATATCCGTAAAGTGTA 191
.| |.|.|||| .|||||.||..|||||.|..|||||||||||.|.||
RBAM_017070__ 300 CGCCCTTCACAT--GCTTCTTTCGCAATGCCGGGATATCCGTAAAATCTA 347
BSNT_02780 192 TTTAAACCGCGAAGTCAAAGCGCTTTTAGACACTGCAACCGAAGCAAGCC 241
|||||||||.|||||.||||||||..|.||.||.|||.|.|||.|....|
RBAM_017070__ 348 TTTAAACCGTGAAGTAAAAGCGCTCCTTGATACGGCAGCTGAATCGTCTC 397
BSNT_02780 242 ATGCGAAGGAAGT----CGTCAGAAACGGGCAAACCC----TGACAGGAA 283
||||.||.||||| ||| ||| |||| || |.|||||||
RBAM_017070__ 398 ATGCAAAAGAAGTGACCCGT----AAC-GGCA---CCGTATTAACAGGAA 439
BSNT_02780 284 AAGGTGTTACTGTCGCTGTTGTCGATACAGGAATCTACCCGCATCCTGAT 333
||||.||.||.|||||.|||.|.|||||.||||||||.|.||||||.|||
RBAM_017070__ 440 AAGGCGTAACCGTCGCCGTTATTGATACCGGAATCTATCAGCATCCCGAT 489
BSNT_02780 334 CTAGAAGGCAGAATTATCGGATTCGCGGACATGGTCAATCAAAAAACAGA 383
.|||||||||||.||||||||||.||||||.|.|||||.|||||.|||||
RBAM_017070__ 490 TTAGAAGGCAGAGTTATCGGATTTGCGGACTTTGTCAACCAAAAGACAGA 539
BSNT_02780 384 GCCGTACGATGATAATGGTCATGGCACACACTGTGCAGGTGATGTCGCAA 433
.|||||.|||||.||.||.||.|||||.||.||.||.||||||.||||||
RBAM_017070__ 540 ACCGTATGATGACAACGGACACGGCACCCATTGCGCCGGTGATATCGCAA 589
BSNT_02780 434 GCAGCGGCGCATCCTCTTCCGGTCAATACCGCGGCCCTGCACCGGAAGCC 483
||||||||||.||.|||||||||.||||.|..||.||.||.|||||||||
RBAM_017070__ 590 GCAGCGGCGCTTCATCTTCCGGTAAATATCAGGGGCCGGCGCCGGAAGCC 639
BSNT_02780 484 AATCTCATCGGCGTAAAGGTATTAAAC-AAGCAGGGTTCAGGAACGTTAG 532
.||||.|||||.||.|||||||||||| ||.|| ||.||||||||.||.|
RBAM_017070__ 640 GATCTGATCGGAGTCAAGGTATTAAACAAATCA-GGATCAGGAACCTTGG 688
BSNT_02780 533 CAGATATTATAGAGGGTGTTGAGTGGTGTATTCAATACAATGAGGACAAC 582
|.|||||.||.||.|||||.||.|||||.||.|||||.|||.| |.|||
RBAM_017070__ 689 CTGATATCATTGAAGGTGTGGAATGGTGCATACAATATAATAA--AGAAC 736
BSNT_02780 583 -CCCGATGAA-CCGAT-TGATATTATTAGCATGTCGCTCGGGGGCGATGC 629
|.|.|.||| ||||| .|| ||.||.||||||||.||.||.||.|||||
RBAM_017070__ 737 ACACAAAGAATCCGATCAGA-ATCATCAGCATGTCACTGGGCGGAGATGC 785
BSNT_02780 630 CCTTAGATATGATCATGAACAGGAAGATCCGTTAGTCAGAGCGGTTGAGG 679
.||.|||||||||.|.|||..|||.||.|||.|.||||..||.|||||..
RBAM_017070__ 786 GCTCAGATATGATAAAGAAACGGACGACCCGCTCGTCAAGGCCGTTGAAA 835
BSNT_02780 680 AAGCGTGGAGCGCAGGGATTGTCGTCTGTGTCGCTGCCGGAAACTCAGGC 729
|.||.||||..|.|||.||.||||||||.|||||.||.||.|||||.||.
RBAM_017070__ 836 AGGCATGGAATGAAGGAATCGTCGTCTGCGTCGCCGCGGGCAACTCCGGT 885
BSNT_02780 730 CCTGATTCGCAGACCATTGCAAGCCCGGGCGTGAGCGAAAAGGTGATTAC 779
||.||..|.||.||.|||.|||||||.||.||.|||||.|||||.||.||
RBAM_017070__ 886 CCGGAAGCTCAAACGATTTCAAGCCCCGGTGTCAGCGAGAAGGTCATCAC 935
BSNT_02780 780 AGTAGGTGCGCT-TGACGATAACAATACTGCAAGCAGCGATGATGATACT 828
||||||.|| || |||.||.||..||||.||..|||..||.||.|||||.
RBAM_017070__ 936 AGTAGGCGC-CTATGATGACAATGATACGGCCGGCAATGAAGACGATACG 984
BSNT_02780 829 GTCGCTTCCTTCTCAAGCCGCGGCCCGACAGTATATGGGAAAGAAAAGCC 878
||||||||.||||||||||||||||||||.||.||.||.|||||.|||||
RBAM_017070__ 985 GTCGCTTCTTTCTCAAGCCGCGGCCCGACGGTGTACGGAAAAGAGAAGCC 1034
BSNT_02780 879 CGATATTTTAGCGCCGGGTGTTAATATTATTTCCCTTCGCTCTCCGAATT 928
.||.|||.|.|||||.||.||..||||..|.||.||.||.||||||..||
RBAM_017070__ 1035 TGACATTCTTGCGCCCGGGGTCGATATCGTATCTCTCCGTTCTCCGCGTT 1084
BSNT_02780 929 CTTATATTGATAAGCTCCAAAAGTCAAGCCGTGTAGGGTCTCAGTACTTT 978
|.|||.||||.||..|.||.||.||||.|||||||||.||...|||.||.
RBAM_017070__ 1085 CATATCTTGACAAATTACAGAAATCAAACCGTGTAGGCTCCTTGTATTTC 1134
BSNT_02780 979 ACAATGTCAGGAACCTCGATGGCAACACCGATTTGCGCAGGAATCGCAGC 1028
|...||||.||.||.||.|||||.||.|||||.||.||.||.||.||.||
RBAM_017070__ 1135 AGTCTGTCGGGCACGTCCATGGCCACTCCGATCTGTGCGGGCATTGCCGC 1184
BSNT_02780 1029 TTTAATTCTTCAGCACAACCCGGATCTTACCCCTGATGAAGT-AAAAGAG 1077
.|||||.||||||||.||||||.|.|||.|.|||||.||||| ||||.|
RBAM_017070__ 1185 CTTAATCCTTCAGCAGAACCCGCAGCTTTCGCCTGACGAAGTGAAAACA- 1233
BSNT_02780 1078 CTTTTGAAA-AACGGCACGGACAAATGGAAAGATGAAGATCCGAATATCT 1126
||..|.||| ||.|.| ||||..||||||.|.|||||||||||||.||.|
RBAM_017070__ 1234 CTGATCAAACAAAGTC-CGGATCAATGGACAAATGAAGATCCGAACATTT 1282
BSNT_02780 1127 ACGGAGCGGGCGCTGTCAACGCAGAAAATTCCGTTCCCGGCC-----AAT 1171
|||||||||||||.||.|||||.|||||..|||| ||| |.|
RBAM_017070__ 1283 ACGGAGCGGGCGCAGTAAACGCTGAAAACGCCGT-----GCCGAAAGAGT 1327
BSNT_02780 1172 AA 1173
||
RBAM_017070__ 1328 AA 1329
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