Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02775 and RBAM_017060

See Amino acid alignment / Visit BSNT_02775 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_02775___ymzB.1.9828.seq
#    -bsequence dna-align/RBAM_017060___ymzB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02775___ymzB-RBAM_017060___ymzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02775___ymzB-RBAM_017060___ymzB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02775___ymzB
# 2: RBAM_017060___ymzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 390
# Identity:     260/390 (66.7%)
# Similarity:   260/390 (66.7%)
# Gaps:          60/390 (15.4%)
# Score: 820.5
# 
#
#=======================================

BSNT_02775___      1 ATGGCAC------ACA-CGAATACACAGCTTTCTCAATGGCTGGAATCAA     43
                     |||||||      ||| |||||       |.|||.||||||||.||  ||
RBAM_017060__      1 ATGGCACTTACAAACACCGAAT-------TGTCTGAATGGCTGCAA--AA     41

BSNT_02775___     44 A-AG-TCGGCCAGACGCTTGATATTAGAAAAGGTGAATTGAC------CC     85
                     | || ||||.||.|||||||||||.||||||||.||..||||      ||
RBAM_017060__     42 ACAGATCGGACAAACGCTTGATATCAGAAAAGGAGAGCTGACAGACAGCC     91

BSNT_02775___     86 ATGATGAA--GAGATATCAGACTTGGATCAGATTGTTCTCCACCTTCAAA    133
                          |||  |||||.||.||..||||||||||..|.||.||||||.|..
RBAM_017060__     92 -----GAAACGAGATTTCTGATATGGATCAGATCATGCTTCACCTTGATG    136

BSNT_02775___    134 AAGTGGCT-ATACGCAGTACGAATCATCCTGATGATTATGTTGCGAAAGA    182
                     |.|| .|| .|.|||.|.||.||.|||||.|||||.|||||.|||.|.||
RBAM_017060__    137 ATGT-TCTCGTCCGCCGGACAAACCATCCCGATGACTATGTAGCGGACGA    185

BSNT_02775___    183 AGAGCTTGTTTTAGAAGGCGAAGGAACAACATTCACTGAGGACGGAAACG    232
                     |||.||.||.|||.||||..|.||.|||||.|..||.|||||.|||||.|
RBAM_017060__    186 AGAACTCGTCTTAAAAGGGCACGGCACAACCTATACGGAGGAAGGAAATG    235

BSNT_02775___    233 TACCGCTTCCGCAAAATGCCTATGAGATTCCTTTATTAGGTGACATT--C    280
                     |.||||||||.|||.||||.|||||.||.|||.|..||||.||||||  |
RBAM_017060__    236 TCCCGCTTCCCCAAGATGCGTATGAAATCCCTCTGCTAGGCGACATTACC    285

BSNT_02775___    281 ATATTCACCAA---GAAAACGAAGGATTGAAGGT-CGTAACAGATCGTGC    326
                     ||     ||||   ||..|.||.|||||.||||| |.| ||||||||.||
RBAM_017060__    286 AT-----CCAAAAGGAGCAAGACGGATTAAAGGTACAT-ACAGATCGGGC    329

BSNT_02775___    327 AGTATATACAATTGATATCC------AGCACAGCTGA---    357
                     .||.||||||||.|..|.||      ||||      |   
RBAM_017060__    330 CGTTTATACAATCGGGACCCGGAAAGAGCA------ATAA    363


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