Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02754 and RBAM_016880

See Amino acid alignment / Visit BSNT_02754 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_02754___mutS.1.9828.seq
#    -bsequence dna-align/RBAM_016880___mutS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02754___mutS-RBAM_016880___mutS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02754___mutS-RBAM_016880___mutS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02754___mutS
# 2: RBAM_016880___mutS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2647
# Identity:    2064/2647 (78.0%)
# Similarity:  2064/2647 (78.0%)
# Gaps:         128/2647 ( 4.8%)
# Score: 8200.0
# 
#
#=======================================

BSNT_02754___      1 ---ATGGCCGGTTATACGCCTATGATACAGCAATATTTAAAAATAAAGGC     47
                        |||||..||||.||||||||||||||||||||.||.||.||||||||
RBAM_016880__      1 ATGATGGCTAGTTACACGCCTATGATACAGCAATACTTGAAGATAAAGGC     50

BSNT_02754___     48 AGAGCACCAGGATGCCTTTTTATTTTTTCGCCTGGGTGATTTTTACGAAA     97
                     |||||||||.||||||||||||||||||||.||.|||||.|||||.||||
RBAM_016880__     51 AGAGCACCAAGATGCCTTTTTATTTTTTCGGCTTGGTGACTTTTATGAAA    100

BSNT_02754___     98 TGTTTTTTGAGGACGCCAAAAAAGCGTCACAAGAGCTGGAAATTACGTTA    147
                     ||||||||||.||.||.||||||||||||||||||||.||||||||..|.
RBAM_016880__    101 TGTTTTTTGAAGATGCAAAAAAAGCGTCACAAGAGCTTGAAATTACACTG    150

BSNT_02754___    148 ACGAGCAGAGATGGCGGTGCGGCTGAAAAAATACCGATGTGCGGTGTGCC    197
                     ||.||||||||.||.|||.|||||||.|||||.|||||||||||.|||||
RBAM_016880__    151 ACAAGCAGAGACGGAGGTTCGGCTGATAAAATTCCGATGTGCGGCGTGCC    200

BSNT_02754___    198 GTATCATTCTGCTTCCGCGTATATCGAACAGCTTATTAAAAAAGGATACA    247
                     |||||||||.||..|.||.|||||.||||||||.||||||||.||.||.|
RBAM_016880__    201 GTATCATTCCGCGGCGGCTTATATTGAACAGCTGATTAAAAAGGGCTATA    250

BSNT_02754___    248 AAGTGGCGATCTGTGAACAGACGGAAGATCCGAAAGCCGCAAAGGGCGTT    297
                     ||||||||||||||||.|||||||||||||||||.||.||.||.||||||
RBAM_016880__    251 AAGTGGCGATCTGTGAGCAGACGGAAGATCCGAAGGCGGCTAAAGGCGTT    300

BSNT_02754___    298 GTGAAAAGAGAAGTGGTTCAGCTGATTACGCCCGGAACTGTAATGGACGG    347
                     ||.|||||||||||.||.||||||||.||.||.|||||.||.|||||.||
RBAM_016880__    301 GTAAAAAGAGAAGTCGTCCAGCTGATCACACCGGGAACCGTGATGGATGG    350

BSNT_02754___    348 CAAAGGCATCCATGAATCGGAAAATAACTTTATCGCATCTGTTTCAGCCT    397
                     .||||||||.||||||||||||||.|||||||||||.||.|||||     
RBAM_016880__    351 AAAAGGCATTCATGAATCGGAAAACAACTTTATCGCTTCCGTTTC-----    395

BSNT_02754___    398 GCTCGA--------ACAGATACGGACTTGCGCTGTCTGATTTAACAACGG    439
                        |||        ||.|||||||.||.||..|.||.||.|||||.||.|
RBAM_016880__    396 ---CGAATTCCGTGACGGATACGGTCTCGCTTTATCGGACTTAACGACTG    442

BSNT_02754___    440 GAGAAAATTTGGCTGTTTTGATTGAACGGCTTGAAGACGTCATATCAGAA    489
                     |||||||..||||.||.||.|||||.|||.|||||||.|||||.||||||
RBAM_016880__    443 GAGAAAACCTGGCCGTATTTATTGAGCGGATTGAAGATGTCATGTCAGAA    492

BSNT_02754___    490 ATTTATTCAGTCGGCGCACGGGAAATCGTGGTTTCAGG--AGGCTTGGAT    537
                     |||||.||||||.|||||..||||||.||.||.|||.|  ||  ||..|.
RBAM_016880__    493 ATTTACTCAGTCAGCGCAAAGGAAATTGTCGTATCAAGCAAG--TTTAAC    540

BSNT_02754___    538 GCCGATACAGTGGCACAGCTGAGAGAGCGGTGCGGTGCAACAATTTCAAT    587
                     |...||||||..||.|||||||.|||.||||||||.||.||.|||||.||
RBAM_016880__    541 GAACATACAGCTGCTCAGCTGAAAGAACGGTGCGGCGCCACGATTTCCAT    590

BSNT_02754___    588 TGAAGACGGAGAAACAGACGAACACGTAACGATCATTG---------AGC    628
                     .||||||||.||||.|       ||..||||  |||||         |||
RBAM_016880__    591 CGAAGACGGGGAAATA-------ACAGAACG--CATTGAAATCGCAAAGC    631

BSNT_02754___    629 ACTTAAATAAT-------GAAGATATAACAAAAACATTTCTGCGCTTATA    671
                     |||       |       |||||..|.|||.|.||.|||.||||.|||||
RBAM_016880__    632 ACT-------TGCCGGGCGAAGAGCTGACAGAGACGTTTATGCGTTTATA    674

BSNT_02754___    672 TACGTATTTGAAAAGAACCCAAAAGCGCAGCCTTGATCATCTTCAGCCCG    721
                     ||||||||||.|.|.|||.|||||.||.|||||.||||||||.|||||.|
RBAM_016880__    675 TACGTATTTGCAGAAAACGCAAAAACGGAGCCTGGATCATCTGCAGCCGG    724

BSNT_02754___    722 TGCAGGTGTATGAGCTTGAGGAAGCGATGAAAATTGACTTGTACTCAAAG    771
                     |.||.||.|||||..|.||.||||||||||||||||||.||||.|||||.
RBAM_016880__    725 TTCAAGTATATGAATTGGAAGAAGCGATGAAAATTGACCTGTATTCAAAA    774

BSNT_02754___    772 CGTAATCTGGAGCTGACCGAAACGATTCGTTCGAAAAATAAAAAAGGCTC    821
                     ||.|||||.||||||||.|||||.||.||||||||||..||||||||.||
RBAM_016880__    775 CGGAATCTTGAGCTGACGGAAACAATCCGTTCGAAAAGCAAAAAAGGGTC    824

BSNT_02754___    822 CCTTTTGTGGCTGCTGGATGAAACAAAAACGGCAATGGGAGGCCGGCTGC    871
                     ..|..|.|||||..|.||.||.||.|||||.||.|||||.||||||||.|
RBAM_016880__    825 ATTGCTTTGGCTTTTAGACGAGACGAAAACAGCGATGGGCGGCCGGCTTC    874

BSNT_02754___    872 TTAAACAGTGGATTGACCGGCCGCTTATCAGAG--TCAATCAAATCGAAG    919
                     |.|||||.|||||||||||.|||||.|||||.|  ||  .||||||||||
RBAM_016880__    875 TCAAACAATGGATTGACCGCCCGCTGATCAGGGCATC--CCAAATCGAAG    922

BSNT_02754___    920 AGCGCCAAGAAATGGTGGAAACATTGATGTCCCATTTCTTTGAACGGGAA    969
                     |.|||||.||||||||.||.||..||||....|||.|.|||||.||.|||
RBAM_016880__    923 AACGCCAGGAAATGGTCGAGACGCTGATCAATCATCTGTTTGAGCGTGAA    972

BSNT_02754___    970 GATCTGCGTGAACGTTTAAAAGAAGTGTATGACTTAGAACGCCTTGCCGG   1019
                     ||||||||.||.||..|.||.|||||.||.||.||||||||.||.||.||
RBAM_016880__    973 GATCTGCGAGAGCGCCTGAAGGAAGTATACGATTTAGAACGTCTGGCGGG   1022

BSNT_02754___   1020 CCGCGTTGCATTCGGAAATGTCAATGCCCGGGATTTGATTCAGCTGAAGG   1069
                     |||.||.|||||||||||.|||||.||..|||||||.||.||||||||.|
RBAM_016880__   1023 CCGGGTCGCATTCGGAAACGTCAACGCAAGGGATTTAATCCAGCTGAAAG   1072

BSNT_02754___   1070 AATCGTTAAAGCAAGTTCCTGGCATCAAACAGCT-----GGTTGCTTCAT   1114
                     ||||.|||||.|||||.||..||||||||.||||     |||..|||.| 
RBAM_016880__   1073 AATCTTTAAAACAAGTGCCGAGCATCAAAGAGCTTGTAGGGTCTCTTAA-   1121

BSNT_02754___   1115 TGGCTCATGACAAGGCCAAGGAACGTGCAAAGCG----CATTGACCCTTG   1160
                         .|||.|.||.||.||.|||||.||    ||    .|||||.||.||
RBAM_016880__   1122 ----CCATAAAAAAGCAAAAGAACGCGC----CGGCTTGATTGATCCGTG   1163

BSNT_02754___   1161 CGGGGATGTACTTGAACTGCTGGAAGAAGCGCTGTACGAAAACCCTCCTT   1210
                     |||.|||.|.|||||.|||.|.||||||||.||..|.||||||||.||.|
RBAM_016880__   1164 CGGAGATTTGCTTGACCTGTTAGAAGAAGCCCTTCATGAAAACCCGCCGT   1213

BSNT_02754___   1211 TATCGGTAAAAGAAGGGAACCTGATTAAAGATGGTTATAATCAAAAGCTT   1260
                     |||||.||||||||||.||..|.||||||||.||.|||.||||.|||||.
RBAM_016880__   1214 TATCGTTAAAAGAAGGCAATTTAATTAAAGACGGCTATCATCAGAAGCTC   1263

BSNT_02754___   1261 GATGAATATCGTGATGCAAGCAGAAACGGAAAAGACTGGATTGCCCGCCT   1310
                     |||||.||.|||||.||.||||.||||||.|||||||||||||||.|.||
RBAM_016880__   1264 GATGAGTACCGTGACGCCAGCAAAAACGGTAAAGACTGGATTGCCAGACT   1313

BSNT_02754___   1311 GGAACAGCAGGAGCGGGAATACACAGGCATTCGCTCTTTAAAGGTCGGCT   1360
                     |||.||||||||.||.|..||.||.|||||.||.||.|||||||||||.|
RBAM_016880__   1314 GGAGCAGCAGGAACGCGCTTATACGGGCATCCGTTCATTAAAGGTCGGTT   1363

BSNT_02754___   1361 TTAATAAAGTTTTCGGTTATTACATTGAAGTGACTAAAGCAAACTTGCAT   1410
                     |.||||||||.|||||.|||||.||||||||.||.|||||||||.|.|||
RBAM_016880__   1364 TCAATAAAGTGTTCGGCTATTATATTGAAGTCACAAAAGCAAACCTTCAT   1413

BSNT_02754___   1411 TTGCTTGAGGAAGGGCGTTATGAGCGGAAGCAGACGTTAACCAATGCCGA   1460
                     .|||||||.||.||.||.|||||||||||.|||||..|.||.||.|||||
RBAM_016880__   1414 CTGCTTGAAGACGGACGGTATGAGCGGAAACAGACCCTCACAAACGCCGA   1463

BSNT_02754___   1461 GCGCTACATTACACCTGAATTAAAAGAAAAAGAAGCGCTCATTTTAGAGG   1510
                     .||.||||||||.||.|||||.||.||||||||||||||.||||||||.|
RBAM_016880__   1464 ACGGTACATTACGCCGGAATTGAAGGAAAAAGAAGCGCTTATTTTAGAAG   1513

BSNT_02754___   1511 CGGAAAATAACATCTGTGAGCTGGAGTACGAGCTGTTTACCGAGCTACGC   1560
                     |||||||.||||||||.||||||||.||.|||||.|||.|||..||.||.
RBAM_016880__   1514 CGGAAAACAACATCTGCGAGCTGGAATATGAGCTTTTTGCCGTACTGCGT   1563

BSNT_02754___   1561 GAGAAAGTGAAGCAGTATATTCCGCGGCTGCAGCAGCTTGCAAAACAGAT   1610
                     ||.||.|||||.||.|.|||||||||..||||||..|||||.|||||.||
RBAM_016880__   1564 GAAAAGGTGAAACAATTTATTCCGCGCTTGCAGCGTCTTGCCAAACAAAT   1613

BSNT_02754___   1611 GAGCGAGCTGGACGCACTGCAATGCTTTGCGACAATCAGTGAAAATCGTC   1660
                     |||.||||||||||||||||||||||||||.||.|||||||||||..|.|
RBAM_016880__   1614 GAGTGAGCTGGACGCACTGCAATGCTTTGCTACGATCAGTGAAAACAGGC   1663

BSNT_02754___   1661 ACTACACGAAACCAGAGTTCTCTAAAGATGAAGTCGAAGTGATTGAAGGC   1710
                     |.|||||.||.||.|..||.|||.|..|||||||..||||.||||||||.
RBAM_016880__   1664 ATTACACAAAGCCCGTCTTTTCTGATAATGAAGTAAAAGTCATTGAAGGG   1713

BSNT_02754___   1711 AGACACCCGGTTGTTGAAAAAGTCATGGACAGCCAGGAATATGTCCCGAA   1760
                     ||||||||.||.||||||||.||.||||||||.||.|||||.||.|||||
RBAM_016880__   1714 AGACACCCCGTCGTTGAAAAGGTGATGGACAGTCAAGAATACGTGCCGAA   1763

BSNT_02754___   1761 TAACTGTATGATGGGCGATAACAGACAAATGCTTCTCATTACAGGTCCAA   1810
                     .|||||..|||||||||||....|..|||||||.||.|||||.|||||.|
RBAM_016880__   1764 CAACTGCCTGATGGGCGATTCGCGGGAAATGCTCCTGATTACGGGTCCGA   1813

BSNT_02754___   1811 ACATGTCAGGGAAAAGCACGTATATGAGACAAATCGCGCTCATTTCCATT   1860
                     |.||||||||.||||||||||||||||||||.|||||.||..|.||.||.
RBAM_016880__   1814 ATATGTCAGGTAAAAGCACGTATATGAGACAGATCGCACTTCTATCGATC   1863

BSNT_02754___   1861 ATGGCGCAAATCGGCTGCTTTGTACCCGCGAAAAAAGCGGTGCTTCCGAT   1910
                     |||||.||.||||||||.|||||.|||||.|||.|||||||.||.|||||
RBAM_016880__   1864 ATGGCTCAGATCGGCTGTTTTGTGCCCGCAAAAGAAGCGGTTCTGCCGAT   1913

BSNT_02754___   1911 TTTCGATCAAATTTTTACGCGAATCGGCGCTGCAGATGATTTGATTTCCG   1960
                     |||.||||||||.||.|||.|||||||.||.||.||||||||||||||||
RBAM_016880__   1914 TTTTGATCAAATCTTCACGAGAATCGGGGCAGCGGATGATTTGATTTCCG   1963

BSNT_02754___   1961 GACAAAGTACATTTATGGTAGAAATGCTTGAAGCGAAAAATGCGATTGTC   2010
                     |||||||.||.||||||||.||||||||.|||||||||||.||||||||.
RBAM_016880__   1964 GACAAAGCACCTTTATGGTGGAAATGCTGGAAGCGAAAAACGCGATTGTG   2013

BSNT_02754___   2011 AACGCGACGAAAAACAGCCTCATTCTGTTTGATGAAATCGGGCGGGGAAC   2060
                     |||||.||.|||.|||||||.||.|||||||||||||||||.||.||.||
RBAM_016880__   2014 AACGCCACAAAAGACAGCCTGATCCTGTTTGATGAAATCGGCCGCGGGAC   2063

BSNT_02754___   2061 GTCCACTTATGACGGCATGGCGCTGGCACAGGCGATTATTGAATATGTTC   2110
                     .||.||.||.|||||.||||||||||||||||||||||||||||||||.|
RBAM_016880__   2064 ATCAACGTACGACGGAATGGCGCTGGCACAGGCGATTATTGAATATGTCC   2113

BSNT_02754___   2111 ACGATCACATCGGCGCCAAGACGCTGTTCAGCACACACTATCACGAGCTG   2160
                     |.|||||.|||||.||.||.||.|||||||||||.||.|||||.||||||
RBAM_016880__   2114 ATGATCATATCGGTGCTAAAACACTGTTCAGCACGCATTATCATGAGCTG   2163

BSNT_02754___   2161 ACCGTTCTTGAGGACAAGCTACCCCAGCTGAAAAACGTTCATGTTCGCGC   2210
                     ||.||.|||||.||.|||||.||.||||||||||||||||||||.|||||
RBAM_016880__   2164 ACGGTGCTTGAAGATAAGCTTCCTCAGCTGAAAAACGTTCATGTGCGCGC   2213

BSNT_02754___   2211 TGAAGAATATAACGGAACGGTTGTCTTTCTTCATCAAATTAAAGAAGGTG   2260
                     .||.|||||||||||||||||.||.|||||.||||||||.||||||||.|
RBAM_016880__   2214 AGAGGAATATAACGGAACGGTCGTGTTTCTCCATCAAATCAAAGAAGGAG   2263

BSNT_02754___   2261 CCGCTGATAAAAGCTATGGTATCCATGTAGCTCAGCTTGCCGAACTGCCG   2310
                     ||||.||||||||.||.||.||.|||||.||.|||||||||||.||.|||
RBAM_016880__   2264 CCGCAGATAAAAGTTACGGCATTCATGTCGCCCAGCTTGCCGAGCTCCCG   2313

BSNT_02754___   2311 GGAGATCTGAT-TGCGCGCGCTCAAGATATTTTAAAAGAGCTTGAGCATT   2359
                     |..|||||||| .|| |||||.||.||.|||||.|||.||||||||||..
RBAM_016880__   2314 GACGATCTGATCAGC-CGCGCGCAGGAGATTTTGAAACAGCTTGAGCAGA   2362

BSNT_02754___   2360 CAGGAAACAAACCGGAAGTGCCGG-------TGCAGAAA--------CCT   2394
                     |.|||.|.||||||||..|.||||       || |||||        |.|
RBAM_016880__   2363 CGGGAGATAAACCGGAGCTTCCGGCGGTATCTG-AGAAAAAGTCCGCCGT   2411

BSNT_02754___   2395 CAGGTGAAAGAAGAGCCGGCACAGCTGTCCTTTTT---TGACGAAGCGGA   2441
                     |||     ||||||.||||||||||||||||||||   |||||  |.|.|
RBAM_016880__   2412 CAG-----AGAAGAACCGGCACAGCTGTCCTTTTTTGCTGACG--GTGAA   2454

BSNT_02754___   2442 AAAG-----------CCGGCTGAAACACCAAAGCTTTCAAAAAAAGAAAA   2480
                     ||||           |||||||            ||||.||.||||||||
RBAM_016880__   2455 AAAGAACAGAAGGCACCGGCTG------------TTTCTAATAAAGAAAA   2492

BSNT_02754___   2481 GCAAGTGATCGATGCTTTCAAATCACTTAATATACTGGATATGACACCGC   2530
                     .||||||.|.||.|||||.||.|||.|.|||||.||.||||||||.||||
RBAM_016880__   2493 ACAAGTGCTTGAAGCTTTTAAGTCAATCAATATTCTCGATATGACGCCGC   2542

BSNT_02754___   2531 TTGAAGCGATGAATGAAATGTACAAGCTGCAAAAGAAATTACATTAA   2577
                     ||||.|||||||||||||||||||||||||||||.||||||.|.||.
RBAM_016880__   2543 TTGAGGCGATGAATGAAATGTACAAGCTGCAAAAAAAATTAAAATAG   2589


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