Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02754 and RBAM_016880
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_02754___mutS.1.9828.seq
# -bsequence dna-align/RBAM_016880___mutS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02754___mutS-RBAM_016880___mutS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02754___mutS-RBAM_016880___mutS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02754___mutS
# 2: RBAM_016880___mutS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2647
# Identity: 2064/2647 (78.0%)
# Similarity: 2064/2647 (78.0%)
# Gaps: 128/2647 ( 4.8%)
# Score: 8200.0
#
#
#=======================================
BSNT_02754___ 1 ---ATGGCCGGTTATACGCCTATGATACAGCAATATTTAAAAATAAAGGC 47
|||||..||||.||||||||||||||||||||.||.||.||||||||
RBAM_016880__ 1 ATGATGGCTAGTTACACGCCTATGATACAGCAATACTTGAAGATAAAGGC 50
BSNT_02754___ 48 AGAGCACCAGGATGCCTTTTTATTTTTTCGCCTGGGTGATTTTTACGAAA 97
|||||||||.||||||||||||||||||||.||.|||||.|||||.||||
RBAM_016880__ 51 AGAGCACCAAGATGCCTTTTTATTTTTTCGGCTTGGTGACTTTTATGAAA 100
BSNT_02754___ 98 TGTTTTTTGAGGACGCCAAAAAAGCGTCACAAGAGCTGGAAATTACGTTA 147
||||||||||.||.||.||||||||||||||||||||.||||||||..|.
RBAM_016880__ 101 TGTTTTTTGAAGATGCAAAAAAAGCGTCACAAGAGCTTGAAATTACACTG 150
BSNT_02754___ 148 ACGAGCAGAGATGGCGGTGCGGCTGAAAAAATACCGATGTGCGGTGTGCC 197
||.||||||||.||.|||.|||||||.|||||.|||||||||||.|||||
RBAM_016880__ 151 ACAAGCAGAGACGGAGGTTCGGCTGATAAAATTCCGATGTGCGGCGTGCC 200
BSNT_02754___ 198 GTATCATTCTGCTTCCGCGTATATCGAACAGCTTATTAAAAAAGGATACA 247
|||||||||.||..|.||.|||||.||||||||.||||||||.||.||.|
RBAM_016880__ 201 GTATCATTCCGCGGCGGCTTATATTGAACAGCTGATTAAAAAGGGCTATA 250
BSNT_02754___ 248 AAGTGGCGATCTGTGAACAGACGGAAGATCCGAAAGCCGCAAAGGGCGTT 297
||||||||||||||||.|||||||||||||||||.||.||.||.||||||
RBAM_016880__ 251 AAGTGGCGATCTGTGAGCAGACGGAAGATCCGAAGGCGGCTAAAGGCGTT 300
BSNT_02754___ 298 GTGAAAAGAGAAGTGGTTCAGCTGATTACGCCCGGAACTGTAATGGACGG 347
||.|||||||||||.||.||||||||.||.||.|||||.||.|||||.||
RBAM_016880__ 301 GTAAAAAGAGAAGTCGTCCAGCTGATCACACCGGGAACCGTGATGGATGG 350
BSNT_02754___ 348 CAAAGGCATCCATGAATCGGAAAATAACTTTATCGCATCTGTTTCAGCCT 397
.||||||||.||||||||||||||.|||||||||||.||.|||||
RBAM_016880__ 351 AAAAGGCATTCATGAATCGGAAAACAACTTTATCGCTTCCGTTTC----- 395
BSNT_02754___ 398 GCTCGA--------ACAGATACGGACTTGCGCTGTCTGATTTAACAACGG 439
||| ||.|||||||.||.||..|.||.||.|||||.||.|
RBAM_016880__ 396 ---CGAATTCCGTGACGGATACGGTCTCGCTTTATCGGACTTAACGACTG 442
BSNT_02754___ 440 GAGAAAATTTGGCTGTTTTGATTGAACGGCTTGAAGACGTCATATCAGAA 489
|||||||..||||.||.||.|||||.|||.|||||||.|||||.||||||
RBAM_016880__ 443 GAGAAAACCTGGCCGTATTTATTGAGCGGATTGAAGATGTCATGTCAGAA 492
BSNT_02754___ 490 ATTTATTCAGTCGGCGCACGGGAAATCGTGGTTTCAGG--AGGCTTGGAT 537
|||||.||||||.|||||..||||||.||.||.|||.| || ||..|.
RBAM_016880__ 493 ATTTACTCAGTCAGCGCAAAGGAAATTGTCGTATCAAGCAAG--TTTAAC 540
BSNT_02754___ 538 GCCGATACAGTGGCACAGCTGAGAGAGCGGTGCGGTGCAACAATTTCAAT 587
|...||||||..||.|||||||.|||.||||||||.||.||.|||||.||
RBAM_016880__ 541 GAACATACAGCTGCTCAGCTGAAAGAACGGTGCGGCGCCACGATTTCCAT 590
BSNT_02754___ 588 TGAAGACGGAGAAACAGACGAACACGTAACGATCATTG---------AGC 628
.||||||||.||||.| ||..|||| ||||| |||
RBAM_016880__ 591 CGAAGACGGGGAAATA-------ACAGAACG--CATTGAAATCGCAAAGC 631
BSNT_02754___ 629 ACTTAAATAAT-------GAAGATATAACAAAAACATTTCTGCGCTTATA 671
||| | |||||..|.|||.|.||.|||.||||.|||||
RBAM_016880__ 632 ACT-------TGCCGGGCGAAGAGCTGACAGAGACGTTTATGCGTTTATA 674
BSNT_02754___ 672 TACGTATTTGAAAAGAACCCAAAAGCGCAGCCTTGATCATCTTCAGCCCG 721
||||||||||.|.|.|||.|||||.||.|||||.||||||||.|||||.|
RBAM_016880__ 675 TACGTATTTGCAGAAAACGCAAAAACGGAGCCTGGATCATCTGCAGCCGG 724
BSNT_02754___ 722 TGCAGGTGTATGAGCTTGAGGAAGCGATGAAAATTGACTTGTACTCAAAG 771
|.||.||.|||||..|.||.||||||||||||||||||.||||.|||||.
RBAM_016880__ 725 TTCAAGTATATGAATTGGAAGAAGCGATGAAAATTGACCTGTATTCAAAA 774
BSNT_02754___ 772 CGTAATCTGGAGCTGACCGAAACGATTCGTTCGAAAAATAAAAAAGGCTC 821
||.|||||.||||||||.|||||.||.||||||||||..||||||||.||
RBAM_016880__ 775 CGGAATCTTGAGCTGACGGAAACAATCCGTTCGAAAAGCAAAAAAGGGTC 824
BSNT_02754___ 822 CCTTTTGTGGCTGCTGGATGAAACAAAAACGGCAATGGGAGGCCGGCTGC 871
..|..|.|||||..|.||.||.||.|||||.||.|||||.||||||||.|
RBAM_016880__ 825 ATTGCTTTGGCTTTTAGACGAGACGAAAACAGCGATGGGCGGCCGGCTTC 874
BSNT_02754___ 872 TTAAACAGTGGATTGACCGGCCGCTTATCAGAG--TCAATCAAATCGAAG 919
|.|||||.|||||||||||.|||||.|||||.| || .||||||||||
RBAM_016880__ 875 TCAAACAATGGATTGACCGCCCGCTGATCAGGGCATC--CCAAATCGAAG 922
BSNT_02754___ 920 AGCGCCAAGAAATGGTGGAAACATTGATGTCCCATTTCTTTGAACGGGAA 969
|.|||||.||||||||.||.||..||||....|||.|.|||||.||.|||
RBAM_016880__ 923 AACGCCAGGAAATGGTCGAGACGCTGATCAATCATCTGTTTGAGCGTGAA 972
BSNT_02754___ 970 GATCTGCGTGAACGTTTAAAAGAAGTGTATGACTTAGAACGCCTTGCCGG 1019
||||||||.||.||..|.||.|||||.||.||.||||||||.||.||.||
RBAM_016880__ 973 GATCTGCGAGAGCGCCTGAAGGAAGTATACGATTTAGAACGTCTGGCGGG 1022
BSNT_02754___ 1020 CCGCGTTGCATTCGGAAATGTCAATGCCCGGGATTTGATTCAGCTGAAGG 1069
|||.||.|||||||||||.|||||.||..|||||||.||.||||||||.|
RBAM_016880__ 1023 CCGGGTCGCATTCGGAAACGTCAACGCAAGGGATTTAATCCAGCTGAAAG 1072
BSNT_02754___ 1070 AATCGTTAAAGCAAGTTCCTGGCATCAAACAGCT-----GGTTGCTTCAT 1114
||||.|||||.|||||.||..||||||||.|||| |||..|||.|
RBAM_016880__ 1073 AATCTTTAAAACAAGTGCCGAGCATCAAAGAGCTTGTAGGGTCTCTTAA- 1121
BSNT_02754___ 1115 TGGCTCATGACAAGGCCAAGGAACGTGCAAAGCG----CATTGACCCTTG 1160
.|||.|.||.||.||.|||||.|| || .|||||.||.||
RBAM_016880__ 1122 ----CCATAAAAAAGCAAAAGAACGCGC----CGGCTTGATTGATCCGTG 1163
BSNT_02754___ 1161 CGGGGATGTACTTGAACTGCTGGAAGAAGCGCTGTACGAAAACCCTCCTT 1210
|||.|||.|.|||||.|||.|.||||||||.||..|.||||||||.||.|
RBAM_016880__ 1164 CGGAGATTTGCTTGACCTGTTAGAAGAAGCCCTTCATGAAAACCCGCCGT 1213
BSNT_02754___ 1211 TATCGGTAAAAGAAGGGAACCTGATTAAAGATGGTTATAATCAAAAGCTT 1260
|||||.||||||||||.||..|.||||||||.||.|||.||||.|||||.
RBAM_016880__ 1214 TATCGTTAAAAGAAGGCAATTTAATTAAAGACGGCTATCATCAGAAGCTC 1263
BSNT_02754___ 1261 GATGAATATCGTGATGCAAGCAGAAACGGAAAAGACTGGATTGCCCGCCT 1310
|||||.||.|||||.||.||||.||||||.|||||||||||||||.|.||
RBAM_016880__ 1264 GATGAGTACCGTGACGCCAGCAAAAACGGTAAAGACTGGATTGCCAGACT 1313
BSNT_02754___ 1311 GGAACAGCAGGAGCGGGAATACACAGGCATTCGCTCTTTAAAGGTCGGCT 1360
|||.||||||||.||.|..||.||.|||||.||.||.|||||||||||.|
RBAM_016880__ 1314 GGAGCAGCAGGAACGCGCTTATACGGGCATCCGTTCATTAAAGGTCGGTT 1363
BSNT_02754___ 1361 TTAATAAAGTTTTCGGTTATTACATTGAAGTGACTAAAGCAAACTTGCAT 1410
|.||||||||.|||||.|||||.||||||||.||.|||||||||.|.|||
RBAM_016880__ 1364 TCAATAAAGTGTTCGGCTATTATATTGAAGTCACAAAAGCAAACCTTCAT 1413
BSNT_02754___ 1411 TTGCTTGAGGAAGGGCGTTATGAGCGGAAGCAGACGTTAACCAATGCCGA 1460
.|||||||.||.||.||.|||||||||||.|||||..|.||.||.|||||
RBAM_016880__ 1414 CTGCTTGAAGACGGACGGTATGAGCGGAAACAGACCCTCACAAACGCCGA 1463
BSNT_02754___ 1461 GCGCTACATTACACCTGAATTAAAAGAAAAAGAAGCGCTCATTTTAGAGG 1510
.||.||||||||.||.|||||.||.||||||||||||||.||||||||.|
RBAM_016880__ 1464 ACGGTACATTACGCCGGAATTGAAGGAAAAAGAAGCGCTTATTTTAGAAG 1513
BSNT_02754___ 1511 CGGAAAATAACATCTGTGAGCTGGAGTACGAGCTGTTTACCGAGCTACGC 1560
|||||||.||||||||.||||||||.||.|||||.|||.|||..||.||.
RBAM_016880__ 1514 CGGAAAACAACATCTGCGAGCTGGAATATGAGCTTTTTGCCGTACTGCGT 1563
BSNT_02754___ 1561 GAGAAAGTGAAGCAGTATATTCCGCGGCTGCAGCAGCTTGCAAAACAGAT 1610
||.||.|||||.||.|.|||||||||..||||||..|||||.|||||.||
RBAM_016880__ 1564 GAAAAGGTGAAACAATTTATTCCGCGCTTGCAGCGTCTTGCCAAACAAAT 1613
BSNT_02754___ 1611 GAGCGAGCTGGACGCACTGCAATGCTTTGCGACAATCAGTGAAAATCGTC 1660
|||.||||||||||||||||||||||||||.||.|||||||||||..|.|
RBAM_016880__ 1614 GAGTGAGCTGGACGCACTGCAATGCTTTGCTACGATCAGTGAAAACAGGC 1663
BSNT_02754___ 1661 ACTACACGAAACCAGAGTTCTCTAAAGATGAAGTCGAAGTGATTGAAGGC 1710
|.|||||.||.||.|..||.|||.|..|||||||..||||.||||||||.
RBAM_016880__ 1664 ATTACACAAAGCCCGTCTTTTCTGATAATGAAGTAAAAGTCATTGAAGGG 1713
BSNT_02754___ 1711 AGACACCCGGTTGTTGAAAAAGTCATGGACAGCCAGGAATATGTCCCGAA 1760
||||||||.||.||||||||.||.||||||||.||.|||||.||.|||||
RBAM_016880__ 1714 AGACACCCCGTCGTTGAAAAGGTGATGGACAGTCAAGAATACGTGCCGAA 1763
BSNT_02754___ 1761 TAACTGTATGATGGGCGATAACAGACAAATGCTTCTCATTACAGGTCCAA 1810
.|||||..|||||||||||....|..|||||||.||.|||||.|||||.|
RBAM_016880__ 1764 CAACTGCCTGATGGGCGATTCGCGGGAAATGCTCCTGATTACGGGTCCGA 1813
BSNT_02754___ 1811 ACATGTCAGGGAAAAGCACGTATATGAGACAAATCGCGCTCATTTCCATT 1860
|.||||||||.||||||||||||||||||||.|||||.||..|.||.||.
RBAM_016880__ 1814 ATATGTCAGGTAAAAGCACGTATATGAGACAGATCGCACTTCTATCGATC 1863
BSNT_02754___ 1861 ATGGCGCAAATCGGCTGCTTTGTACCCGCGAAAAAAGCGGTGCTTCCGAT 1910
|||||.||.||||||||.|||||.|||||.|||.|||||||.||.|||||
RBAM_016880__ 1864 ATGGCTCAGATCGGCTGTTTTGTGCCCGCAAAAGAAGCGGTTCTGCCGAT 1913
BSNT_02754___ 1911 TTTCGATCAAATTTTTACGCGAATCGGCGCTGCAGATGATTTGATTTCCG 1960
|||.||||||||.||.|||.|||||||.||.||.||||||||||||||||
RBAM_016880__ 1914 TTTTGATCAAATCTTCACGAGAATCGGGGCAGCGGATGATTTGATTTCCG 1963
BSNT_02754___ 1961 GACAAAGTACATTTATGGTAGAAATGCTTGAAGCGAAAAATGCGATTGTC 2010
|||||||.||.||||||||.||||||||.|||||||||||.||||||||.
RBAM_016880__ 1964 GACAAAGCACCTTTATGGTGGAAATGCTGGAAGCGAAAAACGCGATTGTG 2013
BSNT_02754___ 2011 AACGCGACGAAAAACAGCCTCATTCTGTTTGATGAAATCGGGCGGGGAAC 2060
|||||.||.|||.|||||||.||.|||||||||||||||||.||.||.||
RBAM_016880__ 2014 AACGCCACAAAAGACAGCCTGATCCTGTTTGATGAAATCGGCCGCGGGAC 2063
BSNT_02754___ 2061 GTCCACTTATGACGGCATGGCGCTGGCACAGGCGATTATTGAATATGTTC 2110
.||.||.||.|||||.||||||||||||||||||||||||||||||||.|
RBAM_016880__ 2064 ATCAACGTACGACGGAATGGCGCTGGCACAGGCGATTATTGAATATGTCC 2113
BSNT_02754___ 2111 ACGATCACATCGGCGCCAAGACGCTGTTCAGCACACACTATCACGAGCTG 2160
|.|||||.|||||.||.||.||.|||||||||||.||.|||||.||||||
RBAM_016880__ 2114 ATGATCATATCGGTGCTAAAACACTGTTCAGCACGCATTATCATGAGCTG 2163
BSNT_02754___ 2161 ACCGTTCTTGAGGACAAGCTACCCCAGCTGAAAAACGTTCATGTTCGCGC 2210
||.||.|||||.||.|||||.||.||||||||||||||||||||.|||||
RBAM_016880__ 2164 ACGGTGCTTGAAGATAAGCTTCCTCAGCTGAAAAACGTTCATGTGCGCGC 2213
BSNT_02754___ 2211 TGAAGAATATAACGGAACGGTTGTCTTTCTTCATCAAATTAAAGAAGGTG 2260
.||.|||||||||||||||||.||.|||||.||||||||.||||||||.|
RBAM_016880__ 2214 AGAGGAATATAACGGAACGGTCGTGTTTCTCCATCAAATCAAAGAAGGAG 2263
BSNT_02754___ 2261 CCGCTGATAAAAGCTATGGTATCCATGTAGCTCAGCTTGCCGAACTGCCG 2310
||||.||||||||.||.||.||.|||||.||.|||||||||||.||.|||
RBAM_016880__ 2264 CCGCAGATAAAAGTTACGGCATTCATGTCGCCCAGCTTGCCGAGCTCCCG 2313
BSNT_02754___ 2311 GGAGATCTGAT-TGCGCGCGCTCAAGATATTTTAAAAGAGCTTGAGCATT 2359
|..|||||||| .|| |||||.||.||.|||||.|||.||||||||||..
RBAM_016880__ 2314 GACGATCTGATCAGC-CGCGCGCAGGAGATTTTGAAACAGCTTGAGCAGA 2362
BSNT_02754___ 2360 CAGGAAACAAACCGGAAGTGCCGG-------TGCAGAAA--------CCT 2394
|.|||.|.||||||||..|.|||| || ||||| |.|
RBAM_016880__ 2363 CGGGAGATAAACCGGAGCTTCCGGCGGTATCTG-AGAAAAAGTCCGCCGT 2411
BSNT_02754___ 2395 CAGGTGAAAGAAGAGCCGGCACAGCTGTCCTTTTT---TGACGAAGCGGA 2441
||| ||||||.|||||||||||||||||||| ||||| |.|.|
RBAM_016880__ 2412 CAG-----AGAAGAACCGGCACAGCTGTCCTTTTTTGCTGACG--GTGAA 2454
BSNT_02754___ 2442 AAAG-----------CCGGCTGAAACACCAAAGCTTTCAAAAAAAGAAAA 2480
|||| ||||||| ||||.||.||||||||
RBAM_016880__ 2455 AAAGAACAGAAGGCACCGGCTG------------TTTCTAATAAAGAAAA 2492
BSNT_02754___ 2481 GCAAGTGATCGATGCTTTCAAATCACTTAATATACTGGATATGACACCGC 2530
.||||||.|.||.|||||.||.|||.|.|||||.||.||||||||.||||
RBAM_016880__ 2493 ACAAGTGCTTGAAGCTTTTAAGTCAATCAATATTCTCGATATGACGCCGC 2542
BSNT_02754___ 2531 TTGAAGCGATGAATGAAATGTACAAGCTGCAAAAGAAATTACATTAA 2577
||||.|||||||||||||||||||||||||||||.||||||.|.||.
RBAM_016880__ 2543 TTGAGGCGATGAATGAAATGTACAAGCTGCAAAAAAAATTAAAATAG 2589
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