Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02742 and RBAM_016790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_02742___pbpX.1.9828.seq
# -bsequence dna-align/RBAM_016790___pbpX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02742___pbpX-RBAM_016790___pbpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02742___pbpX-RBAM_016790___pbpX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02742___pbpX
# 2: RBAM_016790___pbpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1249
# Identity: 857/1249 (68.6%)
# Similarity: 857/1249 (68.6%)
# Gaps: 140/1249 (11.2%)
# Score: 2870.5
#
#
#=======================================
BSNT_02742___ 1 ATGACAAGCCCAACCCGCAGAAGAACTGCGAAACACAGACGGAGAAAACT 50
|||||.|||||...|||||.|||||.....|||.|.|||..||..||.||
RBAM_016790__ 1 ATGACGAGCCCCCGCCGCACAAGAATAAATAAAAAAAGAAAGAAGAAGCT 50
BSNT_02742___ 51 AAATAAAAGAGGAAAACTGTTGCTTGGTCT-----TTTAGCAGTGATGGT 95
.|..||||..|||...|||||.|||..||| || ||.|..||
RBAM_016790__ 51 GATGAAAACGGGAGGGCTGTTTCTTTTTCTGCTGCTT-----GTTACTGT 95
BSNT_02742___ 96 TTGCATTACGATTTGGA-------ATGCTCTTCATCGGAATAGTGAAG-- 136
||..||||.|||.|||| | ||.|.||||||| |.||||
RBAM_016790__ 96 TTTTATTATGATCTGGACCGTCACA-GCGCATCATCGG----GAGAAGGA 140
BSNT_02742___ 137 --------AAAACGAAC---CATCTCAA---GAAACTGCAGCGGTTTCAA 172
||||||..| |..||||| ||.|||.|| ||
RBAM_016790__ 141 ATCCGTTAAAAACGCTCCCGCCGCTCAATCTGATACTTCA--------AA 182
BSNT_02742___ 173 ATACC-----GATCAGAAAAAAGAGGTCAAAAAGAAAACTGC-CAAAAAA 216
|.||| .|.|||||||||| |||||| | |||||
RBAM_016790__ 183 AGACCAGACTCAACAGAAAAAAG------AAAAGA------CGCAAAA-- 218
BSNT_02742___ 217 TCAGAGGAA-----CAAATCAAAACAGTGGATCGAAATCAAAAAATCAGC 261
||||.|| .||||||| |.||||..|||.||.|.||||||
RBAM_016790__ 219 --AGAGAAAACACCTAAATCAA-----TCGATCACAATAAACAGATCAGC 261
BSNT_02742___ 262 AATTATTTAGAAGAAATCGGTTTCAGCGGAACAGCCATGATTGTCAGAAA 311
|||||.||..||.|.|||||.||||||||.|||||.|||||.||.|.|.|
RBAM_016790__ 262 AATTACTTGCAACAGATCGGGTTCAGCGGCACAGCAATGATCGTAAAAGA 311
BSNT_02742___ 312 TGGAGAAATCGTAACAAATAAAGGTTTTGGCTATGCTGACCGTAAACACT 361
||||.||.|.||....||.|||||.|||||||||||.|||||.|||||..
RBAM_016790__ 312 TGGAAAAGTTGTGCTGAAAAAAGGCTTTGGCTATGCGGACCGAAAACAAA 361
BSNT_02742___ 362 ACATTCAAAATAATCCATTGACATCTTTTTATGTCGGTTCATCACAAAAA 411
|.|||.||||.|||||...||||||.|.||||.|||||||.|||||||||
RBAM_016790__ 362 AAATTAAAAACAATCCGGAGACATCATATTATATCGGTTCTTCACAAAAA 411
BSNT_02742___ 412 GCGCTGATTGCAACTGCTATTTTGCAGCTAGAGGAAAAGGGGAAACTTCA 461
|||.|.||.||.||.|||.|..|||||||.||.|||||.|||...||.||
RBAM_016790__ 412 GCGTTAATCGCGACGGCTGTCCTGCAGCTTGAAGAAAAAGGGCTGCTGCA 461
BSNT_02742___ 462 GACAAGTGATCCGGTAAGTACGTATTTACCTCATTTTCCTAACGGACAAA 511
|||.|||||.||.||.|||||.||.||.||..||||||||||||| ||..
RBAM_016790__ 462 GACGAGTGACCCCGTCAGTACATACTTGCCGAATTTTCCTAACGG-CACG 510
BSNT_02742___ 512 CG-ATTACTTTGAAGAATCTGCTTACACATACATCGGGGATAAACGGACA 560
|| |||||.|||||.||.|||||.|..|||||.||.||.||||||||.||
RBAM_016790__ 511 CGCATTACATTGAAAAACCTGCTCAATCATACGTCCGGCATAAACGGGCA 560
BSNT_02742___ 561 TATTGAAGGAGACGGCGCCATTACGCCGGACGATTTAATAAAAGACATAG 610
||||||.|||.|.||..|.|||.|.||....||||||||.||.||.||||
RBAM_016790__ 561 TATTGAGGGACAGGGACCGATTTCTCCAATTGATTTAATCAAGGATATAG 610
BSNT_02742___ 611 A--ACTGCAGGGAATCAAACGTCAGCCGGGCGTATGGGACTACCAGGATT 658
| ||.|| |||||.|||||.|||||.||.||.|||||.|||..|||||
RBAM_016790__ 611 AATACCGC--GGAATTAAACGGCAGCCCGGGGTTTGGGATTACAGGGATT 658
BSNT_02742___ 659 CCAACTATTCTGTTCTCGCTTATAT--TATTGCTGAAGTAAGCGGTGAGC 706
||||||||||.||.||.|||||||| ||| ||.||||.|||||.|||.
RBAM_016790__ 659 CCAACTATTCAGTGCTTGCTTATATCGTAT--CTCAAGTCAGCGGGGAGT 706
BSNT_02742___ 707 CCTATGAACAGTACAT-AAAGAATCATATTTTTAAGCCTGCGGGAATGAC 755
|.||||||||.||.|| |||||| |||.|.||.||.||.||.|||||||.
RBAM_016790__ 707 CTTATGAACAATATATAAAAGAA-CATGTGTTCAAACCGGCCGGAATGAA 755
BSNT_02742___ 756 GCATGCAGGCTTTTACAAAACATATGAAAAAG---AACCTTATCCTGCTG 802
||||||.||.|||||||||||||.||..|||| || ||||||||.|
RBAM_016790__ 756 GCATGCCGGATTTTACAAAACATTTGCCAAAGCCAAA---TATCCTGCCG 802
BSNT_02742___ 803 TCGGGTATAA----GATGAAGGGCGGCAAAACAGTTACACCGTATATACC 848
||||.||.|| |||| ||.||||||.....||.||.||| .|||
RBAM_016790__ 803 TCGGCTACAAAGTCGATG-AGAGCGGCAGTCTTGTAACGCCG----CACC 847
BSNT_02742___ 849 T----GATCTATCCCAGCTGTATGGAGCGGGTGATATTTATATGAGCGCT 894
| ||..||||.|||||||||||.|||||.||.||.||||||||||||
RBAM_016790__ 848 TTCTGGACTTATCACAGCTGTATGGGGCGGGCGACATGTATATGAGCGCT 897
BSNT_02742___ 895 ATAGATATGTACAAATTTGACCAAGCGCTGATAGACGGAAAACTGTATTC 944
..||||.|.||.||||||||..|||||.|..||.||||.|..||...|||
RBAM_016790__ 898 GAAGATCTCTATAAATTTGATAAAGCGATCGTAAACGGCACGCTCCTTTC 947
BSNT_02742___ 945 GCAAAAAAGCTATGA-AAAGATGTTTACGCCAGGGAGCAGCTCCACATAC 993
..||.|||||| |.| |||.||||||||..||||.|||||..||.|.|||
RBAM_016790__ 948 AAAAGAAAGCT-TCACAAAAATGTTTACAGCAGGAAGCAGTGCCGCTTAC 996
BSNT_02742___ 994 GGCATGGGATTTTATGTTGATCCCGGAAGCTATTCAAACCATGGTGTTAT 1043
||||||||.|||||..|||||||.|||||||||||.||.||.||||||||
RBAM_016790__ 997 GGCATGGGGTTTTACATTGATCCGGGAAGCTATTCCAATCACGGTGTTAT 1046
BSNT_02742___ 1044 GCCGGGCTTCAATATCTTGAACAGCTTTAGCAAATCTGGGCAAACCA--T 1091
|||.||.|.|||.||.|||||||||||.|||.|.|| |||||.|.| .
RBAM_016790__ 1047 GCCCGGTTACAACATTTTGAACAGCTTCAGCCATTC--GGCAAGCAAATA 1094
BSNT_02742___ 1092 TGTTATTTTGTTCTCAAACATTCAAAATAATGCTAAATTGGGCCAAGTGA 1141
|||.|||||..|.|||||.|||||.|||||.||.|||||.||.||.||.|
RBAM_016790__ 1095 TGTCATTTTACTGTCAAATATTCAGAATAACGCCAAATTAGGACAGGTAA 1144
BSNT_02742___ 1142 ACAATAAAATATACCA---GCTT-----------CTAAATCAAGAATGA 1176
||||||.|||.||||| |||| ||||
RBAM_016790__ 1145 ACAATAGAATTTACCAATTGCTTAACCAGGCGGACTAA----------- 1182
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