Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02740 and RBAM_016780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:41
# Commandline: needle
# -asequence dna-align/BSNT_02740___recA.1.9828.seq
# -bsequence dna-align/RBAM_016780___recA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02740___recA-RBAM_016780___recA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02740___recA-RBAM_016780___recA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02740___recA
# 2: RBAM_016780___recA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1047
# Identity: 881/1047 (84.1%)
# Similarity: 881/1047 (84.1%)
# Gaps: 3/1047 ( 0.3%)
# Score: 3732.5
#
#
#=======================================
BSNT_02740___ 1 ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAA 50
||||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_016780__ 1 ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAA 50
BSNT_02740___ 51 ACAGTTCGGCAAAGGTTCCATTATGAAACTGGGAGAAAAGACAGATACAA 100
|||.|||||||||||||||||.|||||.||.||||||||.||.|||||||
RBAM_016780__ 51 ACAATTCGGCAAAGGTTCCATCATGAAGCTCGGAGAAAAAACGGATACAA 100
BSNT_02740___ 101 GAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGA 150
|||||||.||.||.||||||||.|||||.||.||||||||.||.||.|||
RBAM_016780__ 101 GAATTTCAACGGTGCCAAGCGGTTCCCTTGCACTTGATACCGCTCTCGGA 150
BSNT_02740___ 151 ATTGGCGGATATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAG 200
||.||||||||.||.||||||||||||||||||||||||||.||||||||
RBAM_016780__ 151 ATAGGCGGATACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAG 200
BSNT_02740___ 201 CTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAAGTTCAGCAGC 250
||||||||||||.|||||.||||||||.||.||.|||||.||||||.|..
RBAM_016780__ 201 CTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAGGTTCAGGAAA 250
BSNT_02740___ 251 AGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTA 300
|.||||||||.||.||.|||||.|||||.||||||||..|.|||||.||.
RBAM_016780__ 251 AAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTT 300
BSNT_02740___ 301 TACGCGCAAAAGCTCGGTGTTAACATCGAGGAGCTTTTACTGTCTCAGCC 350
||||||||||||||||||||.||.|||||.||||||.|.||.||||||||
RBAM_016780__ 301 TACGCGCAAAAGCTCGGTGTCAATATCGAAGAGCTTCTGCTTTCTCAGCC 350
BSNT_02740___ 351 TGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG 400
.||.||.||.|||||||||||.||.|||||.|||||..||||.|||||||
RBAM_016780__ 351 GGATACGGGAGAGCAGGCGCTAGAGATTGCTGAAGCGCTGGTGCGAAGCG 400
BSNT_02740___ 401 GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAA 450
|.||.|||||.||.||.||.||.||||||||.||.||.||.|||||.|||
RBAM_016780__ 401 GAGCTGTTGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAA 450
BSNT_02740___ 451 GCGGAAATTGAAGGCGACATGGGAGATTCTCATGTCGGTTTACAAGCACG 500
||.|||||||||||.||||||||.|||||.||.|||||||||||.||.||
RBAM_016780__ 451 GCTGAAATTGAAGGTGACATGGGTGATTCACACGTCGGTTTACAGGCGCG 500
BSNT_02740___ 501 CTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGA 550
..|.||||||||.|||||.|||||||||||.||.|||||.||.|||||.|
RBAM_016780__ 501 TCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTA 550
BSNT_02740___ 551 AGACAATCGCGATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATG 600
|.||||||||.||.||.||||||||.||||||||||||||||||||||||
RBAM_016780__ 551 AAACAATCGCAATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATG 600
BSNT_02740___ 601 TTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGAAATTCTACTC 650
|||||.||.|||||.||.||.||.||||||||.|||.||||||||||.||
RBAM_016780__ 601 TTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGAAATTCTATTC 650
BSNT_02740___ 651 TTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACG 700
|||||||||.|||||||||||||||||.||.||..|.||.||.|||||||
RBAM_016780__ 651 TTCCGTGCGCCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACG 700
BSNT_02740___ 701 ACGTAATGGGGAACAAAACGAAAATCAAAGTCGTGAAAAACAAGGTGGCT 750
||||.||||||||.|||||||.|||.||||||||.||||||||.||.|||
RBAM_016780__ 701 ACGTCATGGGGAATAAAACGAGAATTAAAGTCGTAAAAAACAAAGTCGCT 750
BSNT_02740___ 751 CCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC 800
||.|||||||||||.||.||.||.||||||||||||||.|||||.||.||
RBAM_016780__ 751 CCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC 800
BSNT_02740___ 801 AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAA 850
.||||||||.||||||||.||.||.|||||||||||.|||||||||||||
RBAM_016780__ 801 CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTGGATATCGTGCAAA 850
BSNT_02740___ 851 AAAGCGGTTCATGGTACTCTTATGAAGAAGAGCGTCTTGGCCAAGGCCGT 900
||||||||||.|||||.||||||||||||||.||.||.||.||.||||||
RBAM_016780__ 851 AAAGCGGTTCGTGGTATTCTTATGAAGAAGAACGCCTCGGTCAGGGCCGT 900
BSNT_02740___ 901 GAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGAT 950
|||||.||.||.||.|||.|.|||||||||||||||||||||||||||||
RBAM_016780__ 901 GAAAACGCCAAGCAGTTCTTAAAAGAAAATAAAGATATCATGCTGATGAT 950
BSNT_02740___ 951 CCAGGAGCAAATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGC 1000
.|||||.|||||.||.|||.|||||||.||.||.||||||||.|||..|.
RBAM_016780__ 951 TCAGGAACAAATCCGTGAATATTACGGTTTAGACAATAACGGTGTAACGG 1000
BSNT_02740___ 1001 AGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGAAGAATAA 1047
| || ||||.|||||....||.|||||..|.|||||.|||||||||
RBAM_016780__ 1001 A-CA--AAGCGGAAGAAGTTCAGGAAGAGATGGAATTAGAAGAATAA 1044
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