Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02735 and RBAM_016730

See Amino acid alignment / Visit BSNT_02735 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:41
# Commandline: needle
#    -asequence dna-align/BSNT_02735___ymfJ.1.9828.seq
#    -bsequence dna-align/RBAM_016730___ymfJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02735___ymfJ-RBAM_016730___ymfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02735___ymfJ-RBAM_016730___ymfJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02735___ymfJ
# 2: RBAM_016730___ymfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 258
# Identity:     214/258 (82.9%)
# Similarity:   214/258 (82.9%)
# Gaps:           0/258 ( 0.0%)
# Score: 894.0
# 
#
#=======================================

BSNT_02735___      1 ATGTCAGTATTAGAAAACTGGGATAGCTGGAAAAACTTCCTTGGCGACCG     50
                     |||||||||||||||||||||||||..|||||.||.||||||||||||.|
RBAM_016730__      1 ATGTCAGTATTAGAAAACTGGGATAATTGGAAGAATTTCCTTGGCGACAG     50

BSNT_02735___     51 TCTGAACTATGCGCAAGATAAAGGTATGAGCCAGGATACGATTACAGATC    100
                     ..|||||||||||||.||.|||||.|||||..|.||.|||||.||.||.|
RBAM_016730__     51 ATTGAACTATGCGCAGGAAAAAGGGATGAGTGATGAAACGATCACTGACC    100

BSNT_02735___    101 TTGCGACAGAAATCGGCAGCTACTTGGCTAATGAAGTGGAATCTAAGAAC    150
                     |.||.||||||||||||.|.|||.|.||.||.|||||.||.||.||.|||
RBAM_016730__    101 TCGCTACAGAAATCGGCGGTTACCTTGCGAACGAAGTCGACTCGAAAAAC    150

BSNT_02735___    151 GAGCAGGAAAAAGTGCTGGCAGATCTTTGGAGTGTAGCATCAAAAGATGA    200
                     .|.||||||||||||||.||.|||||||||||.||.||.||..|||||||
RBAM_016730__    151 CATCAGGAAAAAGTGCTTGCTGATCTTTGGAGCGTTGCTTCTGAAGATGA    200

BSNT_02735___    201 ACAGCACGCCATTGCCAATATGATGGTTAAGCTTGTTGAAAATAACAGCA    250
                     |||||.||||||.||.|||||||||||.||||||||||||||||||||||
RBAM_016730__    201 ACAGCGCGCCATCGCAAATATGATGGTGAAGCTTGTTGAAAATAACAGCA    250

BSNT_02735___    251 CTCACTAG    258
                     ||||.||.
RBAM_016730__    251 CTCATTAA    258


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