Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02733 and RBAM_016710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:41
# Commandline: needle
# -asequence dna-align/BSNT_02733___ymfH.1.9828.seq
# -bsequence dna-align/RBAM_016710___ymfH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02733___ymfH-RBAM_016710___ymfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02733___ymfH-RBAM_016710___ymfH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02733___ymfH
# 2: RBAM_016710___ymfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1309
# Identity: 991/1309 (75.7%)
# Similarity: 991/1309 (75.7%)
# Gaps: 44/1309 ( 3.4%)
# Score: 3713.5
#
#
#=======================================
BSNT_02733___ 1 TTGATCAAACCAATCGAATATGAACAGCTTCAGGAGACGCTGTATCATGA 50
||||..|||||.||..|.|..||||||||||||||.||||||||||||||
RBAM_016710__ 1 TTGACTAAACCGATAAACTTCGAACAGCTTCAGGAAACGCTGTATCATGA 50
BSNT_02733___ 51 AAAAATGTCCAACGGCCTTGATGTTTACGTTTTGCCGAAAAAAGGCTTCA 100
|||||||.|.||||||||||||||.||.||..||||||||.|.|||||.|
RBAM_016710__ 51 AAAAATGGCAAACGGCCTTGATGTCTATGTGCTGCCGAAACAGGGCTTTA 100
BSNT_02733___ 101 ACAAGACATATGCGGTCTTTACAACAAAGTACGGCTCGATAGATAACCGG 150
|.||.|||||.||.||.|||||.|||||||||||.||.||.||.||.|..
RBAM_016710__ 101 ATAAAACATACGCCGTGTTTACGACAAAGTACGGTTCCATTGACAATCAA 150
BSNT_02733___ 151 TTTGTCCCTTTAGGTAAAAACGAGATGGTTCACGTGCCGGACGGGATTGC 200
||.||.||||||..|||..|.||.|||||.|||||.||.|||||.||.||
RBAM_016710__ 151 TTCGTTCCTTTAAATAAGGAAGAAATGGTACACGTCCCTGACGGAATCGC 200
BSNT_02733___ 201 TCACTTTCTTGAGCACAAGCTGTTTGAGAAAGCGGACGGAGACGTTTTTC 250
.||.|||||.|||||.||.||||||||.|||||||||||.|||||.||||
RBAM_016710__ 201 GCATTTTCTGGAGCATAAACTGTTTGAAAAAGCGGACGGCGACGTGTTTC 250
BSNT_02733___ 251 AAGATTTCAGCAAACAGGGGGCTTCTGCCAATGCGTTTACGTCATTTACA 300
|.||.|||||.||.||||||||.||.||.|||||.|||||.|||||||||
RBAM_016710__ 251 AGGACTTCAGTAAGCAGGGGGCGTCGGCAAATGCCTTTACATCATTTACA 300
BSNT_02733___ 301 AGAACGGCTTACCTTTTCTCAAGCACATCAAATGTTGAACGCAATTTAGA 350
.||||.|||||.||.|||||.|||||.||.|||||.||....||..|.||
RBAM_016710__ 301 CGAACCGCTTATCTGTTCTCCAGCACTTCTAATGTGGAGAAAAACCTGGA 350
BSNT_02733___ 351 GACGCTTATCGATTTCGTACAGGACCCATATTTTACTGAAAAAACGGTTG 400
.||.||..|.|||||.||.||||||||.|||||.||.||||||.|.||||
RBAM_016710__ 351 AACACTCGTAGATTTTGTTCAGGACCCGTATTTCACGGAAAAATCAGTTG 400
BSNT_02733___ 401 AAAAGGAAAAAGGGATTATCGGGCAGGAGATTAATATGTACGACGATAAC 450
||||.||||||||.||.|||||.|||||.||.||||||||.||.|||||.
RBAM_016710__ 401 AAAAAGAAAAAGGCATCATCGGCCAGGAAATCAATATGTATGATGATAAT 450
BSNT_02733___ 451 CCTGATTGGAGGCTTTACTTCGGGGTCATTGAAAACATGTACAAAGAGCA 500
||.||||||.||||.|..|||||..|.||.|||||.|||||.|||||.||
RBAM_016710__ 451 CCGGATTGGCGGCTGTTTTTCGGCCTTATCGAAAATATGTATAAAGACCA 500
BSNT_02733___ 501 TCCTGTCAGAATTGACATAGCGGGAACAGTGGAAAGCATTTCACATATTA 550
.||.||.|.|||||||||.||.|||||.|||||.|||||.||.|||||||
RBAM_016710__ 501 CCCCGTGAAAATTGACATTGCCGGAACGGTGGAGAGCATCTCTCATATTA 550
BSNT_02733___ 551 CAAAAGACCTTCTTTATGAATGCTATGAAACGTTTTATCACCCGAGTAAC 600
|.|||||.||.||.|||||.||||||||||||||||||||||||||.||.
RBAM_016710__ 551 CGAAAGATCTGCTGTATGAGTGCTATGAAACGTTTTATCACCCGAGCAAT 600
BSNT_02733___ 601 ATGCTCCTTTTCATTGTCGGACCTGTAGATCCTGAAGCGATTATTTCTCA 650
|||||.||.||.||.|||||.||.|||||||||||||||.|.||....||
RBAM_016710__ 601 ATGCTGCTCTTTATCGTCGGTCCCGTAGATCCTGAAGCGGTCATCAGCCA 650
BSNT_02733___ 651 GGTAAGAGAAAACCAGGGGAAAAAGCCGTATACTGATCAGCCGGAGATCA 700
|||..|..|||||||||.|||||||||||.|||.||.|||||.||.||||
RBAM_016710__ 651 GGTGCGGAAAAACCAGGAGAAAAAGCCGTTTACAGACCAGCCCGAAATCA 700
BSNT_02733___ 701 AACGGGAAGAAGTGAAAGAGCAAGAAGCGGTTTTCCGAAAAGAAAAAGAG 750
||||.||||||||..|.|||||.||||||||||||||....||..|.||.
RBAM_016710__ 701 AACGTGAAGAAGTTCAGGAGCAGGAAGCGGTTTTCCGCCGGGAGCAGGAA 750
BSNT_02733___ 751 ATCAAAATGAACGTGCAGGGACCGAAATGCCTTGTTGGGCTGAAA-TCCA 799
.|.||||||||||||||.||..|.|||||.|||| |.||||.||| .|.|
RBAM_016710__ 751 TTAAAAATGAACGTGCAAGGCTCAAAATGTCTTG-TCGGCTTAAAGGCGA 799
BSNT_02733___ 800 AAAATCCGTTTAAATTAGGCAAAGAGCTCTTAAAGCATGAACTTTCAATG 849
||.|.||.|.||||...||..|.|||||.||.|||||.||.||..|.|||
RBAM_016710__ 800 AAGACCCTTATAAAACGGGGCAGGAGCTGTTGAAGCACGAGCTCACCATG 849
BSNT_02733___ 850 AACTTATTGCTTGAAGCTCTTTTTGGCAAAAGCTCTGCCCAGTATGAATC 899
|||.|..||||||||..|||.||.||.||||||||..|.||.||.| .|.
RBAM_016710__ 850 AACCTCATGCTTGAATGTCTCTTCGGAAAAAGCTCACCGCATTACG-GTG 898
BSNT_02733___ 900 ACTT-TATGAAAAAGGATATATTGACGAAACGTTTAGCTTTGATTTTACT 948
|||| ||.||.|||||.||.|||||.|||||.||.||||||||||..||.
RBAM_016710__ 899 ACTTGTACGACAAAGGCTACATTGATGAAACTTTCAGCTTTGATTACACG 948
BSNT_02733___ 949 GCTGAATATGGGTTCGGTTTTGCGGCGATCGGCGGAGATACGCCTGAGCC 998
||||||||.||.|||||||||||..|..||||.||||||||.||.|||||
RBAM_016710__ 949 GCTGAATACGGATTCGGTTTTGCCTCTGTCGGAGGAGATACACCGGAGCC 998
BSNT_02733___ 999 TGATCAATTGGCTGAAGACATTTCAA-GCATGCT--TTTGCGC------- 1038
.|||.|..|.|||||.|| |||..|| .|||||| ||...||
RBAM_016710__ 999 GGATAAGCTCGCTGACGA-ATTAAAACACATGCTGCTTGATGCAGAATCA 1047
BSNT_02733___ 1039 GCCGGTGAACTGATTACTGCTGAAAAGATTGAACTTGCCAGAAAGAAAAA 1088
|||| |.|||||.|||||..||||.|||||.|||||.||.||
RBAM_016710__ 1048 GCCG---------TGACTGCGGAAAAACTTGATCTTGCGAGAAAAAAGAA 1088
BSNT_02733___ 1089 GATTGGCACATTCTTAAAAGCGCTGAATTCCCCTGAATACATTGCCAATC 1138
|||.||..||||||||||||||||.|||||.||||||||.||.|||||.|
RBAM_016710__ 1089 GATCGGGTCATTCTTAAAAGCGCTCAATTCGCCTGAATATATCGCCAACC 1138
BSNT_02733___ 1139 AATTTACCCGTTATGCGTTCTTGGATATGAGTCTGTTTGACGTTGTAACG 1188
||||.||.||.||.||.||.||.|||||||||||||||||.||.|||||.
RBAM_016710__ 1139 AATTCACACGCTACGCCTTTTTAGATATGAGTCTGTTTGATGTCGTAACC 1188
BSNT_02733___ 1189 GTACTCGAGCAGATTACCCTCGAGGATGTCCAGAACGTAA---------- 1228
|||||.|||||||||||.|| ||||| ||||||
RBAM_016710__ 1189 GTACTGGAGCAGATTACGCT---GGATG------ACGTAAAGCGGGTCAT 1229
BSNT_02733___ 1229 TACAAGAGGAAATTGCTGCAGACAGACTGACTGTCTGCAAGGTTGTTCCT 1278
|| ||||.|||||..|.|.||||||.|||||.||||||||.||.||.||.
RBAM_016710__ 1230 TA-AAGAAGAAATATCAGAAGACAGGCTGACAGTCTGCAAAGTCGTGCCA 1278
BSNT_02733___ 1279 AAATCATAA 1287
|||||||||
RBAM_016710__ 1279 AAATCATAA 1287
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