Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00973 and RBAM_016680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_00973___ydgG.1.9828.seq
# -bsequence dna-align/RBAM_016680.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00973___ydgG-RBAM_016680.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00973___ydgG-RBAM_016680.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00973___ydgG
# 2: RBAM_016680
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 603
# Identity: 252/603 (41.8%)
# Similarity: 252/603 (41.8%)
# Gaps: 291/603 (48.3%)
# Score: 456.5
#
#
#=======================================
BSNT_00973___ 1 TTGAATGAACAAA---------AGCT-ATGTCAGGCGATAAACCTGTTTG 40
.||.|||||.||| |||| || ||| |||.||..||
RBAM_016680 1 GTGCATGAAGAAAAAGTAAAGCAGCTGAT-TCA-GCGTTATTCC------ 42
BSNT_00973___ 41 TGGAAGT---CCTGCTTG----------AAGGGACAGAATTTGTGCATCG 77
||.|| |||||..| ||..|||||.||| ||||
RBAM_016680 43 --GATGTATACCTGCACGTCTTAAAAAAAATTGACAGCATT-----ATCG 85
BSNT_00973___ 78 -TGAAATCAATCAGGATGTCTTCAAGCATATCTCAAGGGAACAGGCAGAC 126
||||| |||.||||| .|||.
RBAM_016680 86 CTGAAA----------------------------AAGTGAACA--AAGAG 105
BSNT_00973___ 127 CTG---TTGAA--AATTTTAAAAGTCAAGGGCCCAACCT----------- 160
||| |||.| |||.||| ||.|||
RBAM_016680 106 CTGACATTGGATCAATATTA-------------CATCCTCCGCTATATTA 142
BSNT_00973___ 161 --CTC---CCGGCA--GC------------CTGGCC---ATGTACCAAAA 188
||| |||| | || |||||| .|||.|| |
RBAM_016680 143 TGCTCAATCCGG-ATTGCAAATCAATTGAACTGGCCGCGGTGTGCC---A 188
BSNT_00973___ 189 TGTACATAAGAGCGC-----GATCT----CTAACAGACTG-----AAAAA 224
.||..||||.||||| .|||| |.|||.|.||| ||||.
RBAM_016680 189 CGTCAATAAAAGCGCCATTACATCTATGACGAACCGCCTGTATGAAAAAG 238
BSNT_00973___ 225 GCT-----------GCTCG----AAAAGGGA--------------TTGGT 245
||| ||.|| .||||.|| || |
RBAM_016680 239 GCTACATCAATAGAGCACGCAGCCAAAGCGACCGCCGGAGCATACTT--T 286
BSNT_00973___ 246 TCAATGGGACGACTGTC-CGGAAAA--------AAGTGATAGGCGCTCTA 286
|.|| |||| ||||||| ||||
RBAM_016680 287 TAAA---------TGTCACGGAAAAGGGGACGGAAGT------------- 314
BSNT_00973___ 287 AGCTTATTAACATTACACCCAGTGG-------------TGAACACATACT 323
|||.||||..|||| .||||.|.|.|.
RBAM_016680 315 -----------ATTTCACCGTGTGGAGCGGCGGATTGAGGAACTCGTCCG 353
BSNT_00973___ 324 AGAAGAATTAGATTCTGCCATCTTTAACGCGCTCAAACCGCTGATTGATG 373
|..| ||.|||.|| |.|| ||||||
RBAM_016680 354 ATCA----TATATTATG---TATT--------------------TTGATG 376
BSNT_00973___ 374 ATATAGATGAGGAACACTTACATTCCATTATC-GAGATATTC------AC 416
| |||.|||| | |||||.||| |
RBAM_016680 377 A---AGACGAGG-------------------CGGAGATGTTCGTGAATA- 403
BSNT_00973___ 417 CATTTTAAAAAGCAAAT---TTAAAG------GAGGAGATTCTGCCGA-A 456
|||.|.|||||..|.|| ||.|.| ||||||..||.||.|| |
RBAM_016680 404 CATATGAAAAATTATATCGATTGATGATGACTGAGGAGGATCAGCAGACA 453
BSNT_00973___ 457 TGA 459
|.|
RBAM_016680 454 TAA 456
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