Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02709 and RBAM_016530
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02709___pnpA.1.9828.seq
# -bsequence dna-align/RBAM_016530___pnpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02709___pnpA-RBAM_016530___pnpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02709___pnpA-RBAM_016530___pnpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02709___pnpA
# 2: RBAM_016530___pnpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2128
# Identity: 1785/2128 (83.9%)
# Similarity: 1785/2128 (83.9%)
# Gaps: 14/2128 ( 0.7%)
# Score: 7545.0
#
#
#=======================================
BSNT_02709___ 1 ATGGGACAAGAAAAACATGTCTTTACCATAGATTGGGCCGGAAGAACGCT 50
|||||||||||.|||||||||||||||||||||||||||||.|||..|||
RBAM_016530__ 1 ATGGGACAAGAGAAACATGTCTTTACCATAGATTGGGCCGGCAGACAGCT 50
BSNT_02709___ 51 TACTGTTGAAACCGGCCAGCTTGCCAAACAGGCAAATGGTGCTGTGATGA 100
|||.||.|||.|||||||||||||||||||||||||.||.|||||.|||.
RBAM_016530__ 51 TACAGTAGAAGCCGGCCAGCTTGCCAAACAGGCAAACGGCGCTGTCATGG 100
BSNT_02709___ 101 TCCGCTACGGTGATACAGCAGTACTTAGTACAGCAACCGCTTCAAAAGAA 150
||||||||||.|||||.|||||.||.||.|||||||||||.|||||||||
RBAM_016530__ 101 TCCGCTACGGCGATACTGCAGTGCTCAGCACAGCAACCGCATCAAAAGAA 150
BSNT_02709___ 151 CCTAAACCGCTTGATTTCTTCCCTCTTACTGTAAACTATGAAGAAAGATT 200
||.||||||||.|||||.|||||.|||||.||.|||||||||||||||||
RBAM_016530__ 151 CCGAAACCGCTAGATTTTTTCCCGCTTACCGTTAACTATGAAGAAAGATT 200
BSNT_02709___ 201 ATATGCGGTAGGGAAAATTCCGGGCGGATTTATTAAAAGAGAAGGACGTC 250
|||.||.|||||.||||||||||||||.|||||||||||||||||.||||
RBAM_016530__ 201 ATACGCAGTAGGTAAAATTCCGGGCGGTTTTATTAAAAGAGAAGGCCGTC 250
BSNT_02709___ 251 CAAGTGAAAAAGCGGTTCTTGCCAGCCGTTTAATTGACCGTCCGATCCGT 300
||||||||||.||.|||.|.|||||||||.|.||.||||||||||||||.
RBAM_016530__ 251 CAAGTGAAAAGGCAGTTTTAGCCAGCCGTCTGATCGACCGTCCGATCCGC 300
BSNT_02709___ 301 CCTTTGTTTGCCGATGGATTCCGTAATGAAGTTCAAGTCATCAGCATTGT 350
||..|.||.||.||.|||||||||||.|||||.||.||||||||||||||
RBAM_016530__ 301 CCGCTTTTCGCAGACGGATTCCGTAACGAAGTACAGGTCATCAGCATTGT 350
BSNT_02709___ 351 CATGAGTGTTGACCAAAACTGCTCTTCAGAAATGGCTGCCATGTTCGGTT 400
||||||||||||.||..|||||||.||.|||||||||||.||||||||||
RBAM_016530__ 351 CATGAGTGTTGATCAGGACTGCTCATCTGAAATGGCTGCAATGTTCGGTT 400
BSNT_02709___ 401 CATCTCTTGCACTTTCTGTATCGGATATTCCGTTTGAAGGACCGATTGCA 450
||||.||.||.||||..||.||.|||||.|||||||||||.|||||.||.
RBAM_016530__ 401 CATCACTCGCTCTTTGCGTTTCCGATATCCCGTTTGAAGGCCCGATCGCG 450
BSNT_02709___ 451 GGGGTTACTGTCGGACGCATTGATGATCAATTTATCATTAACCCGACAGT 500
||.||.||.||.||.||||||||.|...||||..||||.||.|||||.||
RBAM_016530__ 451 GGTGTGACGGTAGGCCGCATTGACGGGAAATTCGTCATCAATCCGACGGT 500
BSNT_02709___ 501 CGATCAGCTTGAAAAAAGCGACATCAATCTTGTCGTTGCCGGCACGAAAG 550
.||.||||||||||||||.||.|||||.||..|||||||.|||||.||||
RBAM_016530__ 501 TGACCAGCTTGAAAAAAGTGATATCAACCTCATCGTTGCAGGCACAAAAG 550
BSNT_02709___ 551 ATGCGATTAACATGGTAGAAGCGGGAGCGGACGAAGTTCCTGAGGAAATC 600
|.||.||.||||||||.|||||.||||||||.|||||||||||.||||||
RBAM_016530__ 551 ACGCCATCAACATGGTGGAAGCCGGAGCGGATGAAGTTCCTGAAGAAATC 600
BSNT_02709___ 601 ATGCTTGAGGCCATTATGTTCGGCCATGAAGAGATTAAACGCCTGATTGC 650
|||||||||||.|||||||||||.||.|||||.|||||.||||||||.||
RBAM_016530__ 601 ATGCTTGAGGCGATTATGTTCGGTCACGAAGAAATTAAGCGCCTGATCGC 650
BSNT_02709___ 651 ATTCCAAGAAGAAATTGTTGCAGCAGTCGGCAAAGAGAAATCTGAAATTA 700
|||||||||||||||.||.|||||||||||||||||||||.|.|||||..
RBAM_016530__ 651 ATTCCAAGAAGAAATCGTCGCAGCAGTCGGCAAAGAGAAAACAGAAATCG 700
BSNT_02709___ 701 AGCTCTTTGAAATTGATGAAGAGCTTAATGAAAAAGT-AAAAGCTTTGGC 749
|.||.|.|||||||||.||||||||.|..|||||||| ||||||.|| ||
RBAM_016530__ 701 AACTGTATGAAATTGACGAAGAGCTCAGCGAAAAAGTAAAAAGCCTT-GC 749
BSNT_02709___ 750 AGAAGAGGATCTGCTGAAAGCCATCCAAGTTCATGAAAAGCATGCCCGTG 799
.||...||||||.||.|..|||||.||.|||||.|||||.|||||.||.|
RBAM_016530__ 750 GGAGCCGGATCTTCTCAGCGCCATTCAGGTTCACGAAAAACATGCTCGCG 799
BSNT_02709___ 800 AAGATGCCATTAACGAAGTGAAGAACGCAGTTGTGGCAAAATTCGAGGAT 849
||||.||.||.||.||||||||.||.||||||||.||.||||||||.||.
RBAM_016530__ 800 AAGACGCGATCAATGAAGTGAAAAATGCAGTTGTCGCGAAATTCGAAGAA 849
BSNT_02709___ 850 GAAGAACATGATGAAGACACAATCAAGCAAGTGAAGCAGATTTTATCCAA 899
|||||.|||||||||||.||.||.||..|||||||.||||...|.||.||
RBAM_016530__ 850 GAAGAGCATGATGAAGATACGATTAAAAAAGTGAAACAGACACTGTCTAA 899
BSNT_02709___ 900 GCTGGTGAAAAATGAAGTTCGCCGCCTGATTACTGAAGAGAAAGTAAGAC 949
.||.||||||||.|||||.|||||..||||.||.|||||.|||||..|.|
RBAM_016530__ 900 ACTCGTGAAAAACGAAGTGCGCCGTTTGATCACAGAAGAAAAAGTCCGTC 949
BSNT_02709___ 950 CGGATGGCCGCGGTGTCGATCAAATCCGCCCGCTCTCTTCAGAGGTTGGC 999
||||.||.||||||||.|||||.|||||||||||.||||||||.||.|||
RBAM_016530__ 950 CGGACGGACGCGGTGTTGATCAGATCCGCCCGCTTTCTTCAGAAGTCGGC 999
BSNT_02709___ 1000 CTCTTGCCAAGAACGCACGGTTCAGGTCTATTTACAAGGGGACAAACTCA 1049
||..||||.|||||||||||.||.||.||.|||||.||.|||||.||.||
RBAM_016530__ 1000 CTTCTGCCGAGAACGCACGGCTCCGGGCTGTTTACGAGAGGACAGACGCA 1049
BSNT_02709___ 1050 GGCCCTCAGCGTATGTACGCTAGGTGCTCTGGGAGATGTGCAGATCCTTG 1099
|||.||||||||||||||..||||.||.||.||.||.||.|||||.||||
RBAM_016530__ 1050 GGCGCTCAGCGTATGTACATTAGGCGCCCTTGGGGACGTTCAGATTCTTG 1099
BSNT_02709___ 1100 ACGGCTTAGGTGTCGAAGAGTCGAAACGGTTTATGCATCATTACAACTTC 1149
||||.|||||.||.|||||.||.|||||.||||||||||||||.||||||
RBAM_016530__ 1100 ACGGTTTAGGCGTGGAAGAATCAAAACGCTTTATGCATCATTATAACTTC 1149
BSNT_02709___ 1150 CCGCAATTCAGCGTTGGGGAAACAGGACCGATGCGCGGACCGGGACGTCG 1199
|||||.||||||||.|||||.|||||.||||||||||||||||||||.||
RBAM_016530__ 1150 CCGCAGTTCAGCGTAGGGGAGACAGGCCCGATGCGCGGACCGGGACGCCG 1199
BSNT_02709___ 1200 TGAAATCGGACACGGAGCACTGGGTGAGCGTGCGCTTGAGCCAGTTATTC 1249
|||.|||||.|||||.||.||.||.|||||||||||||||||.||.||||
RBAM_016530__ 1200 TGAGATCGGTCACGGTGCTCTTGGAGAGCGTGCGCTTGAGCCGGTCATTC 1249
BSNT_02709___ 1250 CGTCTGAAAAAGACTTCCCTTATACTGTCCGTCTTGTTTCAGAAGTGCTT 1299
||..|||||||||||||||.|||||.|||||.||.||.||.|||||||||
RBAM_016530__ 1250 CGAATGAAAAAGACTTCCCGTATACGGTCCGCCTCGTATCCGAAGTGCTT 1299
BSNT_02709___ 1300 GAATCAAACGGTTCTACATCTCAAGCAAGCATTTGCGCAAGCACACTTGC 1349
||||||||||||||.||.||.||.||.|||||||||||.|||||.|||||
RBAM_016530__ 1300 GAATCAAACGGTTCCACTTCACAGGCCAGCATTTGCGCGAGCACGCTTGC 1349
BSNT_02709___ 1350 AATGATGGATGCTGGTGTACCGATTAAAGCGCCAGTTGCTGGTATTGCGA 1399
.||||||||.||.|||||.|||||||||||.||.|||||.|||||.||||
RBAM_016530__ 1350 CATGATGGACGCAGGTGTTCCGATTAAAGCCCCTGTTGCGGGTATCGCGA 1399
BSNT_02709___ 1400 TGGGTCTTGTCAAATCAGGCGAACATTACACTGTCTTGACTGACATCCAA 1449
||||.|||||.|||||||||||..|.||.||.||.||.||.||.||.|||
RBAM_016530__ 1400 TGGGACTTGTGAAATCAGGCGAGTACTATACGGTATTAACGGATATTCAA 1449
BSNT_02709___ 1450 GGCATGGAAGATGCGCTCGGAGATATGGACTTTAAAGTAGCGGGAACTGA 1499
||.||||||||.||.|||||.||.|||||||||||||||||.||.||.||
RBAM_016530__ 1450 GGGATGGAAGACGCCCTCGGTGACATGGACTTTAAAGTAGCCGGCACGGA 1499
BSNT_02709___ 1500 AAAAGGCGTAACGGCCCTGCAAATGGACATTAAAATTGAAGGCCTTTCCA 1549
|||||||||.||.||.||||||||||||||||||||||||||.|||||.|
RBAM_016530__ 1500 AAAAGGCGTGACAGCGCTGCAAATGGACATTAAAATTGAAGGTCTTTCAA 1549
BSNT_02709___ 1550 GAGAGATTCTTGAAGAAGCGCTTCAGCAGGCGAAAAAGGGCAGAATGGAA 1599
||||.||||||||||||||||||||||||||||||||.||.|||||||||
RBAM_016530__ 1550 GAGAAATTCTTGAAGAAGCGCTTCAGCAGGCGAAAAAAGGAAGAATGGAA 1599
BSNT_02709___ 1600 ATCCTCAACAGCATGCTTGCAACA---TTAAGCGAATCAAGAAAAGAGCT 1646
|||.|.||||||||||| ||.|| || .|.||||||||||||||.||
RBAM_016530__ 1600 ATCTTGAACAGCATGCT--CAGCACGCTT-GGTGAATCAAGAAAAGAACT 1646
BSNT_02709___ 1647 TTCTCGATATGCGCCTAAGATCTTAACAATGACCATTAATCCTGATAAAA 1696
|||||.|||||||||.||.||.|||||.||||.|||||||||.|||||||
RBAM_016530__ 1647 TTCTCAATATGCGCCGAAAATTTTAACGATGAACATTAATCCGGATAAAA 1696
BSNT_02709___ 1697 TCCGCGATGTCATCGGACCAAGCGGAAAACAAATCAATAAGATCATCGAA 1746
||||.||.||.||||||||.|||||.|||||||||||.||.|||||.|||
RBAM_016530__ 1697 TCCGTGACGTTATCGGACCGAGCGGTAAACAAATCAACAAAATCATTGAA 1746
BSNT_02709___ 1747 GAAACCGGTGTTAAAATTGATATTGAGCAGGACGGCACAATCTTTATTTC 1796
||.|||||||||||||||||.|||||.||.||||||||.|||||||||||
RBAM_016530__ 1747 GATACCGGTGTTAAAATTGACATTGAACAAGACGGCACCATCTTTATTTC 1796
BSNT_02709___ 1797 CTCTACAGATGAAAGCGGCAACCAAAAAGCGAAAAAAATCATCGAAGACC 1846
.|||||.|||||||||.|||||||||||||||||||||||||||||||.|
RBAM_016530__ 1797 TTCTACTGATGAAAGCAGCAACCAAAAAGCGAAAAAAATCATCGAAGATC 1846
BSNT_02709___ 1847 TTGTTAGAGAGGTTGAAGTCGGCCAACTTTACCTAGGTAAAGTGAAACGG 1896
||||.|||||.||.||||||||.||.||||||||.||||||||.||||||
RBAM_016530__ 1847 TTGTCAGAGAAGTCGAAGTCGGACAGCTTTACCTCGGTAAAGTCAAACGG 1896
BSNT_02709___ 1897 ATTGAAAAATTCGGGGCTTTCGTTGAAATTTTCAGCGGAAAAGACGGTTT 1946
|||||.||||||||.||||||||||||||.||||||||||||||||||.|
RBAM_016530__ 1897 ATTGAGAAATTCGGCGCTTTCGTTGAAATCTTCAGCGGAAAAGACGGTCT 1946
BSNT_02709___ 1947 GGTGCACATTTCAGAGCTTGCGCTTGAACGCGTAGGGAAAGTTGAAGATG 1996
.||.|||||.||.||.||.|||||.|||||.||.||.||.|||||.||||
RBAM_016530__ 1947 CGTTCACATCTCTGAACTAGCGCTCGAACGGGTCGGCAAGGTTGAGGATG 1996
BSNT_02709___ 1997 TTGTAAAAATCGGAGACGAGATTCTTGTCAAAGTCACTGAAATTGATAAA 2046
||||.||||||||.|||||.||.|||||.||.||.|||||||||||.|||
RBAM_016530__ 1997 TTGTGAAAATCGGTGACGAAATCCTTGTGAAGGTAACTGAAATTGACAAA 2046
BSNT_02709___ 2047 CAAGGACGAGTGAATTTATCCCGCAAAGCGGTGCTCCGTGAAGAGAAAGA 2096
||.||||||||||||.|.||.||.|||||.|||||.||.|||||||||||
RBAM_016530__ 2047 CAGGGACGAGTGAATCTGTCGCGTAAAGCAGTGCTGCGCGAAGAGAAAGA 2096
BSNT_02709___ 2097 AAAA------GAAGAACAACAATCTTAA 2118
|||| |||.||||||||||||||
RBAM_016530__ 2097 AAAAGAACAGGAACAACAACAATCTTAA 2124
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