Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02708 and RBAM_016510

See Amino acid alignment / Visit BSNT_02708 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_02708___ribC.1.9828.seq
#    -bsequence dna-align/RBAM_016510___ribC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02708___ribC-RBAM_016510___ribC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02708___ribC-RBAM_016510___ribC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02708___ribC
# 2: RBAM_016510___ribC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 952
# Identity:     718/952 (75.4%)
# Similarity:   718/952 (75.4%)
# Gaps:          11/952 ( 1.2%)
# Score: 2664.0
# 
#
#=======================================

BSNT_02708___      1 GTGAAGACGATACATATTACACATCCTCATCATTTAATAAAAGAGGAGCA     50
                     ||||||||||||||||||.|.|||||.|||||||||..||||||.|||||
RBAM_016510__      1 GTGAAGACGATACATATTTCTCATCCGCATCATTTACAAAAAGAAGAGCA     50

BSNT_02708___     51 GGCAAAATCAGTGATGGCGTTAGGATATTTTGACGGCGTTCATCTCGGGC    100
                     |.|....||.||.||||||.|.||.||.|||||||||||||||.|.||.|
RBAM_016510__     51 GCCGGCGTCTGTCATGGCGCTCGGCTACTTTGACGGCGTTCATTTGGGAC    100

BSNT_02708___    101 ATCAAAAGGTAATCTGCACAGCGAAGCAAATAGCCGAAGAAAAAGGTCTG    150
                     |.|..||.||||||.|.|||||.|..|||||.||||||||||||||.|||
RBAM_016510__    101 ACCGGAAAGTAATCGGAACAGCCAGACAAATTGCCGAAGAAAAAGGCCTG    150

BSNT_02708___    151 ACATTGGCTGTGATGACCTTTCATCCCCATCCTTCTCACGTGTTGGGCAG    200
                     .|..||||.||.|||||.|||||||||||.|||||.||.|||||||||||
RBAM_016510__    151 TCGCTGGCCGTTATGACGTTTCATCCCCACCCTTCCCATGTGTTGGGCAG    200

BSNT_02708___    201 AGATAAGGAACCTAAGGATCTGATTACGCCTCTTGAAGACAAAATAAATC    250
                     .||.||.||.||.|||||||||||||||||.||||||||.|||||.|..|
RBAM_016510__    201 GGACAAAGAGCCAAAGGATCTGATTACGCCGCTTGAAGATAAAATCAGCC    250

BSNT_02708___    251 AAATTGAACAATTAGGTACAGAAGTTCTGTATGTCGTTAAATTTAATGAA    300
                     |.||.|..|..|||||..|.||.||.|||||||||||.||.|||.|||||
RBAM_016510__    251 AGATCGGGCGTTTAGGCGCTGATGTGCTGTATGTCGTGAAGTTTGATGAA    300

BSNT_02708___    301 GTGTTTGCTTCTCTTTCTCCTAAGCAGTTTATAGACCAGTATATTATCGG    350
                     |.||||||.|||||.|||||.||.||||||...||..||||||||.|.||
RBAM_016510__    301 GCGTTTGCGTCTCTGTCTCCAAAACAGTTTGCCGAGGAGTATATTTTAGG    350

BSNT_02708___    351 CCTTAATGTGCAGCACGCAGTGGCAGGCTTTGACTTTACGTACGGCAAAT    400
                     ..|.||.|.||.||||||.||||.||||||.||.|||||||||||.||||
RBAM_016510__    351 GTTAAACGCGCGGCACGCTGTGGGAGGCTTCGATTTTACGTACGGAAAAT    400

BSNT_02708___    401 ACGGCAAGGGAACAATGAAGACCATGCCGGATGATTTAGACGGAAAAGCT    450
                     ||||.||.||.||.|||.||||..|||||||.||||||.||||.||.||.
RBAM_016510__    401 ACGGAAAAGGCACGATGGAGACGCTGCCGGACGATTTAAACGGCAAGGCC    450

BSNT_02708___    451 GGGTGCACAATGGTAGAAAAATTAACGGAGCAGGATAAAAAAATCAGTTC    500
                     ||.|||||.|..||.||.|||...||.||||||||.|.|||.|||||.||
RBAM_016510__    451 GGATGCACGACTGTCGAGAAACAGACCGAGCAGGACAGAAAGATCAGCTC    500

BSNT_02708___    501 TTCGTATATCCGTACTGCGCTTCAAAACGGAGATGTTGAATTGGCG-AAT    549
                     ..|.||||||||..|.|||||.||..|.||.||.||||||.|.||| |..
RBAM_016510__    501 CACTTATATCCGGTCAGCGCTGCAGGATGGTGACGTTGAACTTGCGCACA    550

BSNT_02708___    550 GTCTTGCTTGGACAACCTTATTTTATTAAAGGAATTGTCATTCATGGTGA    599
                     .|||| ||.||.||.||.||||||||....||.|.|||.|||||.||.||
RBAM_016510__    551 CTCTT-CTCGGCCAGCCGTATTTTATCCGGGGCACTGTGATTCACGGAGA    599

BSNT_02708___    600 TAAAAGAGGGCGGACCATCGGGTTTCCGACAGCGAATGTCGGTTTAAATA    649
                     .||||||||.||.||||||||.||||||||.|||||||||||..|..|.|
RBAM_016510__    600 CAAAAGAGGCCGCACCATCGGTTTTCCGACCGCGAATGTCGGCCTGCACA    649

BSNT_02708___    650 ACAGCTATATCGTTCCGCCCACAGGTGTATATGCCGTAAAAGCGGAAGTG    699
                     |||||||||||||.|||||.|||||.||.|||||.||.|||||.|||.|.
RBAM_016510__    650 ACAGCTATATCGTGCCGCCGACAGGCGTGTATGCAGTGAAAGCCGAAATA    699

BSNT_02708___    700 AACGGCGAAGTTTACAATGGCGTTTGCAATATTGGCTATAAGCCGACGTT    749
                     ||.|||||.||.||..|.|||||.|||||.||.|||||.||.|||||.||
RBAM_016510__    700 AAAGGCGAGGTGTATGAAGGCGTCTGCAACATCGGCTACAAACCGACCTT    749

BSNT_02708___    750 TTATGAAAAGCGCCCTGAGCAGCCTTCCATCGAGGTCAATCTGTTTGATT    799
                     ||||||||||||.||.||.|||||.||.||.||.||..||.|||||.|||
RBAM_016510__    750 TTATGAAAAGCGTCCCGATCAGCCGTCAATTGAAGTACATTTGTTTAATT    799

BSNT_02708___    800 TCGATCAAGAGGTATATGGAGCCGCTATAAAAATCGAATGGTACAAACGG    849
                     |..|.||.||.|||||.||||..|...|.||||||||.|||||||||||.
RBAM_016510__    800 TTCAGCAGGATGTATACGGAGAAGACGTTAAAATCGAGTGGTACAAACGA    849

BSNT_02708___    850 ATTCGGAGCGAGCGGAAATTCAATGGTATCAAAGAATTAACAGAGCAAAT    899
                     ||.||.|||||.|||||.||.||.||.|||.|.|||.|.||.|..||.||
RBAM_016510__    850 ATCCGAAGCGAACGGAAGTTTAACGGCATCGATGAACTGACGGCTCAGAT    899

BSNT_02708___    900 TGAGAAAGATAAGCAGGAAGCCATCCGTTATTTCAGCAATTTGCGGAAAT    949
                     .|.||||||.||.||.|||.|.|||||.|.|||||||         ||||
RBAM_016510__    900 CGGGAAAGACAAACAAGAAACGATCCGCTTTTTCAGC---------AAAT    940

BSNT_02708___    950 AA    951
                     ||
RBAM_016510__    941 AA    942


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02708 and RBAM_016510

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
