Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02707 and RBAM_016500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02707___truB.1.9828.seq
# -bsequence dna-align/RBAM_016500___truB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02707___truB-RBAM_016500___truB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02707___truB-RBAM_016500___truB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02707___truB
# 2: RBAM_016500___truB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 951
# Identity: 714/951 (75.1%)
# Similarity: 714/951 (75.1%)
# Gaps: 42/951 ( 4.4%)
# Score: 2617.0
#
#
#=======================================
BSNT_02707___ 1 ATGGTTAACGGAGTTCTCCTTTTACATAAACCTGTTGGCATGACATCGCA 50
||||||||||||||||||||||||||||||||.||.||||||||.||.||
RBAM_016500__ 1 ATGGTTAACGGAGTTCTCCTTTTACATAAACCGGTCGGCATGACTTCTCA 50
BSNT_02707___ 51 CGACTGTGTCATGAAGATCCGAAAGCTGTTAAAAACAAAAAAAGTAGGAC 100
|||||||||.|||||.||..||||.||||||||||||||.|||||.||||
RBAM_016500__ 51 CGACTGTGTAATGAAAATAAGAAAACTGTTAAAAACAAAGAAAGTCGGAC 100
BSNT_02707___ 101 ATACAGGAACGCTCGATCCGGAAGTGTCAGGCGTGCTTCCGATTTGTGTA 150
||||.||||||||.||||||||||||||||||||.||.|||||.|||||.
RBAM_016500__ 101 ATACGGGAACGCTTGATCCGGAAGTGTCAGGCGTACTGCCGATCTGTGTC 150
BSNT_02707___ 151 GGAAGAGCGACAAAAATAGTCGAATACTTAACTGAAAAATCTAAAACGTA 200
|||.|.||.|||||.||.||.||.|||.|.||.||.||.||.||||||||
RBAM_016500__ 151 GGACGGGCCACAAAGATTGTTGAGTACGTCACCGACAAGTCAAAAACGTA 200
BSNT_02707___ 201 TGATGCAGAAATAACGCTTGGCTTTTCAACCACTACAGAGGATCAAACCG 250
.|||||.||.||.||.||.|||||.||.||..|.||.||.||.||.||.|
RBAM_016500__ 201 CGATGCTGAGATCACTCTCGGCTTCTCCACATCGACCGAAGACCAGACTG 250
BSNT_02707___ 251 GAGAAACGGT----GGAAATAAAGCCTGTCAATCACGACATTGATA-AAG 295
|||||||||| | ||||.||||||||..| |.|..|||.| |||
RBAM_016500__ 251 GAGAAACGGTCAGCG----TAAAACCTGTCAAGGA-GCCGCTGAAAGAAG 295
BSNT_02707___ 296 CGGATGTAGAAAAG--GTTTTA----AACAGTTTAAAGGGGAAACAAGAA 339
|||| ||..|||| |||||| ||| |.|||||....||.||.
RBAM_016500__ 296 CGGA--TATCAAAGCCGTTTTAGACGAAC----TGAAGGGACCGCAGGAG 339
BSNT_02707___ 340 CAAATTCCGCCCATGTATTCCGCTGTAAAAGTAAACGGCAAAAAATTATA 389
|||.|.|||||.|||||||||||||||||.||.|||||.|||||..|.||
RBAM_016500__ 340 CAAGTGCCGCCGATGTATTCCGCTGTAAAGGTCAACGGGAAAAAGCTCTA 389
BSNT_02707___ 390 CGAATACGCAAGAGCAGGGATTGAAGTAGAACGTCCGAAACGTATGATAA 439
.||||||||.||.||.||.|||||||||||.||.|||||.||.|..||.|
RBAM_016500__ 390 TGAATACGCCAGGGCGGGTATTGAAGTAGAGCGGCCGAAGCGGAATATCA 439
BSNT_02707___ 440 CCATTGAAGACATTGCCCTGAC-------GACAGAGATTA-AACATCATG 481
|.||||||||.||.||.||.|| |.|| .||| ||| |
RBAM_016500__ 440 CGATTGAAGATATCGCGCTCACTTCCCCAGTCA---CTTATAAC-----G 481
BSNT_02707___ 482 GAGAAACCGCAAGCTTCCGGTTTACAGTGACTTGCTCCAAAGGG-ACCTA 530
.|||.||.|||...|||||.||||||||.||.|||| ||||||| ||.||
RBAM_016500__ 482 AAGACACAGCATCATTCCGCTTTACAGTTACGTGCT-CAAAGGGCACTTA 530
BSNT_02707___ 531 TGTAAGGACGCTGGCGGTCATGATCGGAGAAAAGCTCGGATATCCGGCTC 580
.||.||.||..|||||||.|..|||||.|||||.|||||.|||||.||.|
RBAM_016500__ 531 CGTGAGAACATTGGCGGTGACAATCGGTGAAAAACTCGGCTATCCCGCGC 580
BSNT_02707___ 581 ATATGTCTCATTTAATCCGTACGGCATCCGGAGATTTTTCTCTCGACGAA 630
|||||||.|||.|.|||||.||.||.|||||.|||||....||.||.||.
RBAM_016500__ 581 ATATGTCGCATCTCATCCGCACCGCTTCCGGCGATTTCAGCCTTGATGAG 630
BSNT_02707___ 631 TGCTTTACTTTTGATGAGCTCGAAGCA-CAGGCCCAATCCGGAACCGTGG 679
||.||.||.|||||.||.||.||| || ||||....|..||||||.||.|
RBAM_016500__ 631 TGTTTCACGTTTGAGGAACTTGAA-CAGCAGGTTTCAGACGGAACGGTTG 679
BSNT_02707___ 680 AAGAGCATACAGTTCCTATTGAACGTGCGCTCAATCATTTGCCGAAATGG 729
.|||||||.|.||.||.||.||..|.||||||||||||||||||||||||
RBAM_016500__ 680 CAGAGCATGCCGTGCCGATCGATAGAGCGCTCAATCATTTGCCGAAATGG 729
BSNT_02707___ 730 ATCATAAGTGATACATTAGCTAAGAAAGTAGAAAATGGGGCTTTGCTTGA 779
.|||||||||||||||||||||||||||..|||||.|||.|..||.||||
RBAM_016500__ 730 GTCATAAGTGATACATTAGCTAAGAAAGCTGAAAACGGGTCAGTGTTTGA 779
BSNT_02707___ 780 GACGCCCGAGCAGTTTTCTGAAATGACAAGTGAAGACCGTATCGCCGTCT 829
.|..||.|.|.|.|||||||.|||||||..|||.|.||||||.||.||||
RBAM_016500__ 780 CATCCCGGCGGAATTTTCTGCAATGACAGCTGACGCCCGTATAGCGGTCT 829
BSNT_02707___ 830 TTACTGAATCTGGAACCTGTTTGGCGATCTATTTCCCTCATCCTGCAAAA 879
.|||||||...|||...|||.||||.||.|||.|.||.||||||.|||||
RBAM_016500__ 830 GTACTGAAGACGGAGAATGTGTGGCCATTTATATGCCGCATCCTTCAAAA 879
BSNT_02707___ 880 AAAGGGCTGTTAAAGCCGGCAAAAGTATTGATGCAAAAAAGCGAACAATA 929
|||||.|||.|.||.|||||.|||||..|.||||||||||||||||||||
RBAM_016500__ 880 AAAGGACTGCTGAAACCGGCTAAAGTGCTCATGCAAAAAAGCGAACAATA 929
BSNT_02707___ 930 G 930
.
RBAM_016500__ 930 A 930
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