Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02696 and RBAM_016410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02696___proS.1.9828.seq
# -bsequence dna-align/RBAM_016410___proS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02696___proS-RBAM_016410___proS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02696___proS-RBAM_016410___proS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02696___proS
# 2: RBAM_016410___proS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1715
# Identity: 1329/1715 (77.5%)
# Similarity: 1329/1715 (77.5%)
# Gaps: 40/1715 ( 2.3%)
# Score: 5127.0
#
#
#=======================================
BSNT_02696___ 1 ATGAGACAAAGCTTGACGCTTATTCCTACGCTCCGTGAAGTTCCAGCTGA 50
|||||||||||.||||||||||||||.||.||..|.|||||.||.|||||
RBAM_016410__ 1 ATGAGACAAAGTTTGACGCTTATTCCGACCCTGAGAGAAGTGCCGGCTGA 50
BSNT_02696___ 51 TGCCGAAGCAAAAAGTCATCAGCTTCTTCTGAGAGCAGGATTTATCAGAC 100
|||.|||||||||||.|||.|||||||.||||||||.|||||||||||||
RBAM_016410__ 51 TGCTGAAGCAAAAAGCCATAAGCTTCTGCTGAGAGCGGGATTTATCAGAC 100
BSNT_02696___ 101 AGAATACGAGCGGGGTATACAGCTATATGCCTCTTGCGTATAAGGTGATT 150
|.||||||||||||||.||||||||.|||||.||.||.||.|.|||.|||
RBAM_016410__ 101 AAAATACGAGCGGGGTTTACAGCTACATGCCCCTGGCTTACAGGGTCATT 150
BSNT_02696___ 151 CAAAACATTCAGCAGATTGTTCGAGAGGAAATGGAGAAAATTGATGCCGT 200
||||||||||||.||||.||.||.||.||||||||.|||||..|.||.||
RBAM_016410__ 151 CAAAACATTCAGAAGATCGTGCGTGAAGAAATGGAAAAAATCAACGCGGT 200
BSNT_02696___ 201 AGAAATGCTCATGCCCGCATTGCAGCAGGCAGAGACATGGCAGGAATCAG 250
.||||||||.|||||.||..|.||||||||.||.||||||||||||||||
RBAM_016410__ 201 GGAAATGCTGATGCCGGCCCTTCAGCAGGCTGAAACATGGCAGGAATCAG 250
BSNT_02696___ 251 GCAGATGGTATACGTATGGTCCCGAACTGATGAGACTAAAAGACCGTCAT 300
||||.|||||||||||.||.||.|||.|.|||.|.||.||||||||.||.
RBAM_016410__ 251 GCAGGTGGTATACGTACGGGCCTGAATTAATGCGTCTGAAAGACCGCCAC 300
BSNT_02696___ 301 GGCCGTGAATTTGCTTTAGGGGCAACGCATGAAGAGGTTATCACTTCGCT 350
||||||||||||||||||||.||.||.||||||||.||.||.|||||.||
RBAM_016410__ 301 GGCCGTGAATTTGCTTTAGGCGCGACACATGAAGAAGTCATTACTTCTCT 350
BSNT_02696___ 351 TGTTCGCGATGAGGTTAAATCTTATAAGCGTCTCCCTCTGACTCTTTATC 400
.||.|||||||||||.|||||||||||||||||.||.||.||||||||.|
RBAM_016410__ 351 CGTGCGCGATGAGGTGAAATCTTATAAGCGTCTGCCGCTCACTCTTTACC 400
BSNT_02696___ 401 AAATTCAGTCTAAGTTCAGAGATGAAAAACGTCCTCGCTTCGGTTTGTTA 450
|.||.||||||||.|||||||||||||||||.||.||.|||||.||.||.
RBAM_016410__ 401 AGATCCAGTCTAAATTCAGAGATGAAAAACGCCCGCGTTTCGGGTTATTG 450
BSNT_02696___ 451 AGAGGCCGCGAATTTATTATGAAGGATGCGTACTCTTTCCATGCATCTGC 500
.|.||.||||||||.||.|||||.||||||||.|||||||||||.||||.
RBAM_016410__ 451 CGCGGACGCGAATTCATCATGAAAGATGCGTATTCTTTCCATGCTTCTGA 500
BSNT_02696___ 501 AGAGAGCCTGGATGAAACGTATCAAAAAATGTACGAGGCCTATTCTAATA 550
|||.||.|||||.|||||.||.|||||.|||||||..||.||....|..|
RBAM_016410__ 501 AGAAAGTCTGGAGGAAACATACCAAAATATGTACGGCGCATACAGCAGCA 550
BSNT_02696___ 551 TTTTTGCCCGCTGCGGCATT-AATGTAAGACCTGTTATCGCTGATTCAGG 599
||||.||.||||| .|.||| ||.||..|.||.|||||.||.||.||.||
RBAM_016410__ 551 TTTTCGCACGCTG-TGAATTAAACGTCCGTCCCGTTATTGCCGACTCGGG 599
BSNT_02696___ 600 CGCAATGGGAGGAAAGGATACGCACGAATTTATGGCACTTTCTGCGATCG 649
|||.|||||.|||||.||.|||||.|||||||||||.|||||||..||.|
RBAM_016410__ 600 CGCGATGGGCGGAAAAGACACGCATGAATTTATGGCTCTTTCTGAAATAG 649
BSNT_02696___ 650 GAGAGGATACGATTGCGTATTCTGATGAATCACAGTACGCGGCTAATATC 699
|.||.|||||.||.||.|||||.||||.|||....|||||.||.||||..
RBAM_016410__ 650 GGGAAGATACCATCGCTTATTCCGATGGATCCTCTTACGCAGCCAATACG 699
BSNT_02696___ 700 GAGATGGCTGAAGT--TCTTCACCAGGAAGTTCCTTCAGATGAAGAGCCT 747
||.|||||.||||| ||.|.|.|||..|| ||.|||||||||...||.
RBAM_016410__ 700 GAAATGGCGGAAGTTGTCATGAACAGCGAG--CCGTCAGATGAAACACCC 747
BSNT_02696___ 748 AAAGCTCTAGAGAAGGTTCATACGCCTAACGTGAAAACAATCGAAGAACT 797
.|.||..|.|||||..||.|||||||.||.||.||||..||.|||||.||
RBAM_016410__ 748 GAGGCATTGGAGAAAATTGATACGCCGAATGTCAAAAGCATTGAAGAGCT 797
BSNT_02696___ 798 GACTGCGTTCTTACAGGTTTCG-GCTGAAGCG--TGCATTAAGTCAGTAT 844
..||.|||||||.||| .||| ||.| |||| |||||.|||||..|..
RBAM_016410__ 798 CGCTTCGTTCTTGCAG--ATCGAGCCG-AGCGCCTGCATCAAGTCCATGC 844
BSNT_02696___ 845 TGTTTAAAGCTGATGACCGTTTTGTCTTAGTGCTTGTAAGAGGGGATCAT 894
|||||||||||||||||||.|||||..|.|||.|.||||||||.||||||
RBAM_016410__ 845 TGTTTAAAGCTGATGACCGATTTGTTCTCGTGTTAGTAAGAGGCGATCAT 894
BSNT_02696___ 895 GAAGTTAACGATATTAAAGTGAAAAACTTGCTTCATGCAGAAGTTGTAGA 944
||.||.||.||..|.||||||||||||.|.||..|.||.|||||.||.||
RBAM_016410__ 895 GAGGTCAATGACGTGAAAGTGAAAAACCTTCTGAACGCGGAAGTGGTTGA 944
BSNT_02696___ 945 GCTTGCTACACATGAAGAGGTCATTCAGC-----AGCTCGGAACAGAGCC 989
||||||..|.||||||||.|| ||| |.||.||.||.|||||
RBAM_016410__ 945 GCTTGCGTCTCATGAAGAAGT-----AGCCGAGAAACTTGGCACGGAGCC 989
BSNT_02696___ 990 AGGCTTTG---------TAGGCCCTGTCGGTATTCATCAGGATGTGGAAG 1030
.||.|||| |.|||.|||.||| .||..|.||..
RBAM_016410__ 990 GGGATTTGCGGGGCCGATCGGCGCTGCCGG---------CGACATTGAGA 1030
BSNT_02696___ 1031 TATATGCCGATCAAGCTGTGAAAGCAATGGTTAATGCTGTTGCCGGGGCA 1080
|.||||||||.|||||.|||||||.||||||.||.||.|||..|||.||.
RBAM_016410__ 1031 TTTATGCCGACCAAGCCGTGAAAGTAATGGTAAACGCCGTTAGCGGCGCG 1080
BSNT_02696___ 1081 AATGAAGGAGATCATCATTATAAAAATGTCAATGTGAATCGTGACGCGCA 1130
||||||..|||.|.||||||...|||.||.||..|..|.|||||||||..
RBAM_016410__ 1081 AATGAAAAAGACCGTCATTACCGAAACGTAAACATCGAGCGTGACGCGTC 1130
BSNT_02696___ 1131 AATTAAAGAATTTGCTGATCTTCGTTTTATTAAAGAAGGTGATCCTTCAC 1180
..|.||||..|.|||.||||||||..|.|||.|.|||||.|||||.||||
RBAM_016410__ 1131 TGTAAAAGCGTATGCCGATCTTCGAATCATTCAGGAAGGCGATCCGTCAC 1180
BSNT_02696___ 1181 CAGACGGCAAGGGAACGATCCGTTTTGCTGAGGGAATCGAAGTCGGACAA 1230
|.|||||.||.||.|||||||||||.|||||.||.||.||.|||||||||
RBAM_016410__ 1181 CTGACGGAAAAGGCACGATCCGTTTCGCTGAAGGGATTGAGGTCGGACAA 1230
BSNT_02696___ 1231 GTCTTTAAGCTCGGAACACGCTATTCAGAAGCGATGAATGCGACATATTT 1280
||||||||.|||||.||.||.||.||.||||||||||||||||||||..|
RBAM_016410__ 1231 GTCTTTAAACTCGGCACGCGTTACTCTGAAGCGATGAATGCGACATACCT 1280
BSNT_02696___ 1281 AGATGAAAACGGACGCGCGCAGCCAATGCTGATGGGCTGTTACGGAATCG 1330
.|||||||||||.||.||||||||.|||||||||||.|||||||||||||
RBAM_016410__ 1281 TGATGAAAACGGGCGTGCGCAGCCGATGCTGATGGGATGTTACGGAATCG 1330
BSNT_02696___ 1331 GTGTGTCAAGAACGCTTTCTGCTATTGCTGAACAGCATCACGACGAAAAA 1380
|.|||||.|||||||||||.||.||.||||||||||||||||||||||||
RBAM_016410__ 1331 GCGTGTCCAGAACGCTTTCAGCCATCGCTGAACAGCATCACGACGAAAAA 1380
BSNT_02696___ 1381 GGCTTAATATGGCCAAAAAGCGTTGCGCCGTACGATCTTCATATTCTTGC 1430
||||||||.|||||.|||||||||||.|||||.||.|||||||||.|.||
RBAM_016410__ 1381 GGCTTAATCTGGCCGAAAAGCGTTGCTCCGTATGACCTTCATATTTTGGC 1430
BSNT_02696___ 1431 TTTGAACATGAAAAACGATGGGCAAAGAGAGCTTGCTGAAAAGCTGTATG 1480
..||||.|||||||||||.|.|||||.|||||||||||||.||||.||.|
RBAM_016410__ 1431 GCTGAATATGAAAAACGAAGCGCAAAAAGAGCTTGCTGAACAGCTTTACG 1480
BSNT_02696___ 1481 CCGATTTAAAAGCGGAAGGCTATGAAGTGCTCTATGATGACCGTGCTGAG 1530
.|.|.||..|.||||||||.|||||.||..|.||.||||||||.|||||.
RBAM_016410__ 1481 GCAAATTCCAGGCGGAAGGTTATGAGGTATTATACGATGACCGCGCTGAA 1530
BSNT_02696___ 1531 CGTGCCGGCGTAAAATTCGCTGATTCAGATTTAATCGGCCTTCCAATCCG 1580
||.||.|||||.||.||.||||||||.|||.|.|||||||||||.|||||
RBAM_016410__ 1531 CGCGCAGGCGTGAAGTTTGCTGATTCTGATCTGATCGGCCTTCCGATCCG 1580
BSNT_02696___ 1581 CATCACTGTCGGAAAACGAGCTGACGAAGGAATCGTCGAAGTGAAAATTC 1630
||||||||||||||||||.||.||.|||||.|||||.|||||||||||.|
RBAM_016410__ 1581 CATCACTGTCGGAAAACGTGCCGATGAAGGCATCGTAGAAGTGAAAATCC 1630
BSNT_02696___ 1631 GTCAAACTGGTGAGTCAACTGAGATTTCAGTAGACGAATTATCTGCGTTT 1680
|..||||.|||||.||..|.||..|||||||.||.||..|.||||..|||
RBAM_016410__ 1631 GCAAAACCGGTGAATCTGCCGAAGTTTCAGTGGATGAGCTTTCTGAATTT 1680
BSNT_02696___ 1681 ATCAGCAAGCAGTAA 1695
||||..|.|.|||||
RBAM_016410__ 1681 ATCAAGACGAAGTAA 1695
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