Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02691 and RBAM_016380

See Amino acid alignment / Visit BSNT_02691 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_02691___cdsA.1.9828.seq
#    -bsequence dna-align/RBAM_016380___cdsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02691___cdsA-RBAM_016380___cdsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02691___cdsA-RBAM_016380___cdsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02691___cdsA
# 2: RBAM_016380___cdsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity:     621/817 (76.0%)
# Similarity:   621/817 (76.0%)
# Gaps:          44/817 ( 5.4%)
# Score: 2304.0
# 
#
#=======================================

BSNT_02691___      1 ATGAAACAAAGAATTTTGACAGGTGTTCTGGCAGCAATTG----TATTTT     46
                     ||||||||||||.|.||.|||||||||||||||||    |    ||||||
RBAM_016380__      1 ATGAAACAAAGATTGTTAACAGGTGTTCTGGCAGC----GGCACTATTTT     46

BSNT_02691___     47 TATTTTTGGTTATTGTCGGGAAATTGCCGTTCACCATATTAATTTATGCT     96
                     ||||||||||||||.||||...|||||||||||||.||||..||||.|..
RBAM_016380__     47 TATTTTTGGTTATTTTCGGAGGATTGCCGTTCACCGTATTTGTTTACGTG     96

BSNT_02691___     97 ATGGGCAGTGTGGCGCTTTTTGAACTTTTACGGATGAAAAAGCTGAAGCT    146
                     |||||.|||.|.|||||||||||.|||||.||||||||||||||.|...|
RBAM_016380__     97 ATGGGAAGTATAGCGCTTTTTGAGCTTTTGCGGATGAAAAAGCTCAGATT    146

BSNT_02691___    147 GGTTTCACTGCCGGGTTTGATCGGTCTTTTATTATTGTGGATGTTCTTAT    196
                     ..||||..|.||||||.|||||.|.||.||.||.||.|||.|||  .|||
RBAM_016380__    147 TTTTTCTTTTCCGGGTCTGATCAGCCTCTTGTTGTTATGGCTGT--ATAT    194

BSNT_02691___    197 --TGCCAAGCCAGTATTCGTTTTTT-GAAGCGGACGGAATTTCCAAAATG    243
                       ||||...|.|||| ||.|||||| ||.|||            ||||||
RBAM_016380__    195 GATGCCGGACAAGTA-TCATTTTTTCGATGCG------------AAAATG    231

BSNT_02691___    244 GAA--ATCGCTTTATTTGCGGTACTGCTATTGCTGACTTACACAGTGTTG    291
                     |||  |.||.||  ||.||.|||.||.|..||||.|..||.||.|||.|.
RBAM_016380__    232 GAAGTAACGATT--TTCGCCGTATTGATTCTGCTCAGCTATACGGTGCTC    279

BSNT_02691___    292 GTCAAGAACACCTTTACTTTTGATGAAGTCGGGTTTATTACG--CTTGCA    339
                     ||.||.|||||||||||.|||||.||||||||||||||  ||  ||.||.
RBAM_016380__    280 GTGAAAAACACCTTTACGTTTGACGAAGTCGGGTTTAT--CGTTCTCGCG    327

BSNT_02691___    340 GCAATTTACATCGGAATGTGTTTTCATTATTTTATCGAAATCAGAAATCT    389
                     .|..|.||.||||||.|||||||||||||||||||.|||||||||||..|
RBAM_016380__    328 ACGGTATATATCGGACTGTGTTTTCATTATTTTATTGAAATCAGAAACAT    377

BSNT_02691___    390 TG-ACCAATACGGATTAACATACATTTTTTATGCGTGTGTTGTCATTTGG    438
                     || |.||| ||||..|....||.||.||||||||.||.||||||||.|||
RBAM_016380__    378 TGAAACAA-ACGGGCTTTTGTATATCTTTTATGCCTGCGTTGTCATATGG    426

BSNT_02691___    439 TCCACCGATTCCGGTGCCTATTTTGTCGGTAAATCGCTTGGGAAGCGGAA    488
                     ||.||.||.||.||.||.|||||.|||||.||.|||||.|||||||||||
RBAM_016380__    427 TCAACGGACTCAGGCGCATATTTCGTCGGAAAGTCGCTCGGGAAGCGGAA    476

BSNT_02691___    489 ACTGTGGCCTGAAATCAGTCCGAATAAAACAGTGGAAGGGTTTGCAGGCG    538
                     .||||||||.|||||||||||.||.|||||.||||||||||||...||||
RBAM_016380__    477 GCTGTGGCCCGAAATCAGTCCCAACAAAACGGTGGAAGGGTTTCTCGGCG    526

BSNT_02691___    539 GAATTGTCATCGCACTTGTATTGGCGACGATTTTTCAGCTTGTTGCACAA    588
                     |.|||||||||||.|||.|.||..||.|..||||||||||..||||.||.
RBAM_016380__    527 GTATTGTCATCGCCCTTATTTTTACGGCTGTTTTTCAGCTGTTTGCGCAC    576

BSNT_02691___    589 CTTCCGATCCCGTATATC---TATCTGCTGTTGATCACGCTGTTTTTGTC    635
                     ||||||||..|  |||||   | |||..||.|.||||||||..||.||||
RBAM_016380__    577 CTTCCGATTTC--ATATCCGGT-TCTTTTGGTCATCACGCTTGTTCTGTC    623

BSNT_02691___    636 TGTTTTCGGACAACTTGGAGATTTAGTGGAATCCGC-CTTGAAAAGACAT    684
                     |||.||||||||..|.||.|||||.||.|||||.|| ||| ||..|.||.
RBAM_016380__    624 TGTGTTCGGACAGATCGGGGATTTGGTTGAATCAGCGCTT-AAGCGGCAC    672

BSNT_02691___    685 TACGATGTAAAGGATTCTGGGAAAATTCTTCCCGGGCATGGCGGTATATT    734
                     ||.|||||.||||||||.||.|||||.|||||||||||.|||||.||.||
RBAM_016380__    673 TATGATGTGAAGGATTCGGGAAAAATCCTTCCCGGGCACGGCGGCATTTT    722

BSNT_02691___    735 AGACCGTTTTGACAGTTTCTTGTTTGTCATGCCTTTCTTGTACTTTCTGC    784
                     |||.||.||||||||.||.||||||||||||||.|||||.||||||||||
RBAM_016380__    723 AGATCGATTTGACAGCTTTTTGTTTGTCATGCCGTTCTTATACTTTCTGC    772

BSNT_02691___    785 TTGCCCTTTTTTCATAA    801
                     ||||.||||||||||.|
RBAM_016380__    773 TTGCGCTTTTTTCATGA    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02691 and RBAM_016380

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
