Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02690 and RBAM_016370

See Amino acid alignment / Visit BSNT_02690 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_02690___uppS.1.9828.seq
#    -bsequence dna-align/RBAM_016370___uppS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02690___uppS-RBAM_016370___uppS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02690___uppS-RBAM_016370___uppS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02690___uppS
# 2: RBAM_016370___uppS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity:     625/790 (79.1%)
# Similarity:   625/790 (79.1%)
# Gaps:          14/790 ( 1.8%)
# Score: 2476.0
# 
#
#=======================================

BSNT_02690___      1 ATGCTCAACATACTCAAAAATTGGAAGAATCAGCAAACTGCGGCTTCCAA     50
                     |||||||||||||||||||||||||||||||||||.|.||||||||||||
RBAM_016370__      1 ATGCTCAACATACTCAAAAATTGGAAGAATCAGCAGAATGCGGCTTCCAA     50

BSNT_02690___     51 CTTAGAACGTTATACAAAAGAAGACATACTTAAGGGAGAAATTCCCGAAC    100
                     |||||||||.||||||||||||||||||||.|||||.||||||||||.||
RBAM_016370__     51 CTTAGAACGGTATACAAAAGAAGACATACTGAAGGGTGAAATTCCCGCAC    100

BSNT_02690___    101 ACATCGCCATTATCATGGATGGAAATGGCCGTTGGGCTAAAAAACGCTCT    150
                     ||||.||||||||.|||||.|||||.||.||.|||||.||.||.|||||.
RBAM_016370__    101 ACATTGCCATTATTATGGACGGAAACGGACGCTGGGCGAAGAAGCGCTCA    150

BSNT_02690___    151 CTTCCCAGAATTGCAGGCCACCATGAAGGGATGAAGGTGGTAAAAAGGAC    200
                     ||.||..|.||||||||.||.||||||||.|||||.||||||||||||..
RBAM_016370__    151 CTCCCTCGGATTGCAGGACATCATGAAGGAATGAAAGTGGTAAAAAGGGT    200

BSNT_02690___    201 CACGAAGCTCGCAAACGAATTAGGTGTCAAAGTACTGACATTGTATGCAT    250
                     .||.||||||||||...|..|.||.||.|||||.|||||..|.|||||.|
RBAM_016370__    201 GACAAAGCTCGCAAGTCAGCTCGGCGTTAAAGTTCTGACTCTTTATGCGT    250

BSNT_02690___    251 TTTCAACAGAAAACTGGAAAAGACCGAAAATGGAAGTCGATTTTTTAATG    300
                     |||||||.||.||||||||..|.|||||.|||||||||||.|||||.|||
RBAM_016370__    251 TTTCAACGGAGAACTGGAAGCGCCCGAAGATGGAAGTCGACTTTTTGATG    300

BSNT_02690___    301 AAGCTTCCGGAAGAATTTTTGAATACGTATCTTCCAGAGCTTGTTGAGGA    350
                     ||||||||||||||.||..||||||||||||||||.||..|..|.|||||
RBAM_016370__    301 AAGCTTCCGGAAGAGTTCCTGAATACGTATCTTCCTGAATTAATAGAGGA    350

BSNT_02690___    351 AAATGTACAGGTTCGGATCATTGGGGATGAAACGGCTTTGCCGGCGCACA    400
                     ||||||||||||....||.||.||.||||||.|.||..|.||..|.||  
RBAM_016370__    351 AAATGTACAGGTGAAAATTATCGGAGATGAATCCGCGCTCCCTTCTCA--    398

BSNT_02690___    401 CATTACGT-----GCGATTGAAAAAGCTGTACAGGACACGGCGCAAAACG    445
                        |||||     ||||||||.||.||.|||.|.||.||.|..|||||.|
RBAM_016370__    399 ---TACGTACAGGGCGATTGAGAAGGCCGTAAAAGATACAGAACAAAATG    445

BSNT_02690___    446 ACGGAATGATCCTTAATTTTGCTCTTAACTATGGAGGCCGTACTGAAATT    495
                     ||||..||||.||.|||||.|||.|.|||||.||.||.||.||.|||||.
RBAM_016370__    446 ACGGGCTGATTCTCAATTTCGCTTTGAACTACGGCGGACGCACGGAAATC    495

BSNT_02690___    496 GTCAGTGCTGCAAAATCACTCGCGGAAAAAGTGAAGGAA--GGCTCTTTG    543
                     ||||.|||.||||||.||||.||.|||.|.|||||  ||  |||.|..||
RBAM_016370__    496 GTCAATGCGGCAAAAGCACTGGCTGAACAGGTGAA--AAGCGGCACGCTG    543

BSNT_02690___    544 AATATTGAAGACATTGATGAATCGCTTTTTTCTACTTATTTGATGACTGA    593
                     |||||.|||||||||||||||.||||.|||||.....||||.|||||.||
RBAM_016370__    544 AATATCGAAGACATTGATGAAGCGCTCTTTTCCGGGCATTTAATGACAGA    593

BSNT_02690___    594 ATCTTTGCAGGATCCTGAACTTTTAATTCGAACGAGCGGCGAGATAAGGC    643
                     |||..|.|||||.||.||.||..|.||..||||||||||.||.||.||..
RBAM_016370__    594 ATCACTCCAGGACCCGGAGCTGCTCATCAGAACGAGCGGAGAAATCAGAT    643

BSNT_02690___    644 TGAGTAATTTTATGCTATGGCAGGTTGCCTACAGTGAATTTGTCTTTACT    693
                     ||||.||.||||||||.||||||||.||.||||||||||||||.|||||.
RBAM_016370__    644 TGAGCAACTTTATGCTTTGGCAGGTGGCTTACAGTGAATTTGTTTTTACA    693

BSNT_02690___    694 GACGTCTTGTGGCCTGACTTTAAAGAAGATCACTTCTTGCAGGCGTTAGG    743
                     ||.|||.|||||||.||.|||||||||||||||||..|||||||..|.||
RBAM_016370__    694 GATGTCCTGTGGCCCGATTTTAAAGAAGATCACTTTCTGCAGGCAGTGGG    743

BSNT_02690___    744 AGAGTTTCAGCAGAGAGGCCGGAGGTTTGGCGGAATTTAG    783
                     |||.|||||||||.|.||||||||||||||||||||||||
RBAM_016370__    744 AGAATTTCAGCAGCGGGGCCGGAGGTTTGGCGGAATTTAG    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02690 and RBAM_016370

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
