Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02684 and RBAM_016320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_02684___ylxL.1.9828.seq
# -bsequence dna-align/RBAM_016320___swrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02684___ylxL-RBAM_016320___swrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02684___ylxL-RBAM_016320___swrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02684___ylxL
# 2: RBAM_016320___swrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 547
# Identity: 353/547 (64.5%)
# Similarity: 353/547 (64.5%)
# Gaps: 113/547 (20.7%)
# Score: 1161.0
#
#
#=======================================
BSNT_02684___ 1 GTGAAAAACATGTCAACACTATTATGGCTTTTAAGCTTTACGCTCCACGG 50
||||||||||||||||||||||||||||||..|||.|||||
RBAM_016320__ 1 ---------ATGTCAACACTATTATGGCTTTTAAGCTTTGTGCTTCACGG 41
BSNT_02684___ 51 CGTTCTTCTGTACGCTGTCATTATCCTGTATACGAGGCTCGCTGCAGTGA 100
|||.||.||.||.||.||||||||.|||||.||||||.|..|.||..|.|
RBAM_016320__ 42 CGTACTGCTTTATGCCGTCATTATTCTGTACACGAGGTTTTCAGCCCTCA 91
BSNT_02684___ 101 AAGAAACAGAAAAACAGCAAAAACAGATACTTGAAGAGACGGAAAACACC 150
|.||.||.||....|||||.||..||||.|||||||||||||||||||||
RBAM_016320__ 92 AGGAGACGGAGCGCCAGCAGAAGAAGATTCTTGAAGAGACGGAAAACACC 141
BSNT_02684___ 151 TTGGCGGCATTTCTGCTTGAATTAAAAGAAGAAAATGAGAAACT-GATAG 199
.|.||.||.|||||||||||..|.||||||||||||||.|.||| || ||
RBAM_016320__ 142 CTTGCAGCGTTTCTGCTTGAGCTGAAAGAAGAAAATGAAAGACTCGA-AG 190
BSNT_02684___ 200 A---AAATAAAGCTTCATCTGCAAGTCAA---TCAGATGAAGAATCCCAA 243
| || ||||| .||||| .|.||.|.||||
RBAM_016320__ 191 ACGCAA--AAAGC----------CGTCAAGCGCCGGACGCAGAA------ 222
BSNT_02684___ 244 AAGTCAGGCCTTCAG-ACCTCTGAAACATATCAAGAGCGGGATCCAGTCC 292
.|.||| | |||.||| ||||.|.|.|
RBAM_016320__ 223 ----GACGCC----GAACCCCTG-------------GCGGAACCGA---- 247
BSNT_02684___ 293 AAGAGGCAGAG---AATCTTCCTGAACATATTGAAGGTCTGATTACAGAG 339
|||| |||| .||.||||.||.||.||.|||...||.|| |||
RBAM_016320__ 248 AAGA---AGAGCCTGATATTCCGGACCACATGGAAAAGCTCAT--CAG-- 290
BSNT_02684___ 340 GTTG-------ACCGTCGGGAAGAGCTCGTAAACA---GTGAGGTCCAAT 379
|| ||.|.|.|.|||.|.| |.||||| |||.| ||.|
RBAM_016320__ 291 --TGCAACGGAACGGGCTGAAAGTGAT-GAAAACAACGGTGCG---CATT 334
BSNT_02684___ 380 CATTTGAAGACCAGGTCATAGAATTATATGAACAGGGATATTCGGCAAGT 429
|.||||||||.|..||...|||||||||||||||.| ||| |
RBAM_016320__ 335 CGTTTGAAGAACGTGTTTCAGAATTATATGAACAAG-------GGC---T 374
BSNT_02684___ 430 C----------AAATTGCCCAGAAA---ATGAAGAGCGGAAAGACAGAAA 466
| ||||.||| ||| |||.||||||||||||||||||
RBAM_016320__ 375 CACCCCCGCGGAAATCGCC---AAACGGATGCAGAGCGGAAAGACAGAAA 421
BSNT_02684___ 467 TCGAGCTATTTTTAAAATTTCGCTCCAAAGGTGTAAAGGATTCTTGA 513
|||||||.|||||||||||||||..|||||.||||||||||||||||
RBAM_016320__ 422 TCGAGCTGTTTTTAAAATTTCGCGGCAAAGCTGTAAAGGATTCTTGA 468
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