Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02676 and RBAM_016260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02676___cheB.1.9828.seq
# -bsequence dna-align/RBAM_016260___cheB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02676___cheB-RBAM_016260___cheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02676___cheB-RBAM_016260___cheB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02676___cheB
# 2: RBAM_016260___cheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1119
# Identity: 797/1119 (71.2%)
# Similarity: 797/1119 (71.2%)
# Gaps: 96/1119 ( 8.6%)
# Score: 2786.0
#
#
#=======================================
BSNT_02676___ 1 TTGATTCGTGTGCTTGTAGTTGATGATTCAGCTTTTATGAGAAAAATGAT 50
.||||||||||||||||.||||||||.|||||||||||||||||.|||||
RBAM_016260__ 1 GTGATTCGTGTGCTTGTCGTTGATGACTCAGCTTTTATGAGAAAGATGAT 50
BSNT_02676___ 51 AAGTGATTTTCTGACCGAGGAAAAGCAGATAGAAGTAATCGGAACTGCGA 100
.|..|||||||||.|.|.||||..||||||||||||.|||||.||.||.|
RBAM_016260__ 51 TACCGATTTTCTGGCTGCGGAAGTGCAGATAGAAGTCATCGGGACAGCCA 100
BSNT_02676___ 101 GAAACGGAGAAGAAGCGCTTAAGAAGATTGA-ATTATTAAAACCGGATGT 149
|||||||.|||||.|||||.|||||.||.|| .||.|| |||||||||||
RBAM_016260__ 101 GAAACGGGGAAGAGGCGCTGAAGAAAATAGAGCTTCTT-AAACCGGATGT 149
BSNT_02676___ 150 TATTACTCTTGATGTTGAAATGCCGGTCATGAATGGGACAGATACGCTCC 199
|.|.||.||||||.|||||||||||||||||||.||.||.|||||..|.|
RBAM_016260__ 150 TGTCACGCTTGATATTGAAATGCCGGTCATGAACGGAACGGATACATTGC 199
BSNT_02676___ 200 GCAAAATTATTGAG-ATTTAT-AACTTGCCGGTCATTATGGTGTCTAGCC 247
|.||.||.| |.|| ||.||| ||||| ||.||.||.|||||.||.||||
RBAM_016260__ 200 GGAAGATCA-TCAGCATATATAAACTT-CCCGTAATCATGGTATCGAGCC 247
BSNT_02676___ 248 AGACCGAGAAAGGTAAAGAATGCACAATTAATTGTTTGGAGATCGGTGCC 297
||||..||.||||.||.||..|.||.||.||.|||.||||.||.||.||.
RBAM_016260__ 248 AGACACAGCAAGGGAAGGACCGAACGATCAACTGTCTGGAAATGGGCGCT 297
BSNT_02676___ 298 TTTGACTTTATCACAAAGCCATCAGGTTCAATATCTCTGGATCTATACAA 347
|||||.||||||||.|||||.||.||..|.||.||.||.|||||.||.||
RBAM_016260__ 298 TTTGATTTTATCACCAAGCCTTCCGGAGCGATTTCACTTGATCTTTATAA 347
BSNT_02676___ 348 AATTAAAGAACAATTAGTTGAGCGTGTCGTCGCGGCAGGACTTTCCGGC- 396
|||||||||.||..|..|||||.|.||..|.||.||.||.||.|||.||
RBAM_016260__ 348 AATTAAAGAGCAGCTGATTGAGAGGGTGATTGCAGCCGGGCTGTCCCGCG 397
BSNT_02676___ 397 ------------AAGCGG------AAACGTCCTGTTTCCCAGACAGTTCG 428
|.|||| ||..|||.|.|.||||.||..||.||
RBAM_016260__ 398 CACAAAAACCTGAGGCGGCAGTGAAAGAGTCTTCTATCCCGGAACGTCCG 447
BSNT_02676___ 429 GCCCGAACCTATTGTGCGTGCTGTCGTT--AAGCCTGAATTAAGCAAA-- 474
|| ||..|||.|.| || |||.|.|| |||||||
RBAM_016260__ 448 GC---------TTTGGCGGGAT----TTGAAAGACCGA---AAGCAAAAT 481
BSNT_02676___ 475 CCG--AAACCTGGCACGGGCAGACAAATTGTGTGTATCGGCACATCAACA 522
||| ||||..|.| ||.|..||||..||.||.|||
RBAM_016260__ 482 CCGCCAAACAGGCC---------------GTATTCATCGCGACCTCTACA 516
BSNT_02676___ 523 GGCGGTCCACGAGCGTTACAAAAGGTGATACCGAAGCTCCCTAAAGATTT 572
|||||.||.||.||..|.|||||||||||.|||||.||.||.||.|||||
RBAM_016260__ 517 GGCGGACCGCGGGCTCTGCAAAAGGTGATTCCGAAACTGCCGAAGGATTT 566
BSNT_02676___ 573 GAACGCACCAGTGGTTGTCGTTCAGCACATGCCTGAAGGGTTTACTGCTT 622
.||.||.||.||..|||||||||||||||||||||||||.||.||.||||
RBAM_016260__ 567 AAAGGCGCCTGTATTTGTCGTTCAGCACATGCCTGAAGGTTTCACCGCTT 616
BSNT_02676___ 623 CTTTGGCTGATCGGCTGAATCATTTATCTGACATTCAGGTAAAAGAAGCA 672
|..|.||.||..|.||.||.|||||.||.||.||||||||.||||||||.
RBAM_016260__ 617 CACTTGCAGACAGACTCAACCATTTGTCAGATATTCAGGTCAAAGAAGCG 666
BSNT_02676___ 673 AAAGATGGTGAAGCAGCTCTTAACGGCTGTGTTTACATAGCACCGGGCGG 722
.||.|.|||||||.|||.....||||.||.||.|||||.|||||.|||||
RBAM_016260__ 667 GAAAACGGTGAAGAAGCGAAAGACGGATGGGTGTACATCGCACCCGGCGG 716
BSNT_02676___ 723 AAAAAACATATCCGTTATTAAAAACAG--------CGAAGGACTCCAGGT 764
||||||.||..|.||| .||| .||||| ||||...|
RBAM_016260__ 717 AAAAAATATGACGGTT-------GCAGAGGAAGGCGGAAGG-CTCCGCAT 758
BSNT_02676___ 765 TGTGCTTGATAACCATGACACCCCAAGCCGTCATAAACCATCTGCTGATT 814
..|.|||||....|||||.||...||||||.||||||||.||.||.||||
RBAM_016260__ 759 CATTCTTGACGTTCATGATACGGAAAGCCGGCATAAACCGTCAGCCGATT 808
BSNT_02676___ 815 ATTTATTCCGTTCTGTCGGGAAAC----TGACAGATTATGAAAAAGTAGC 860
||||.| |||.|||||.||.| |..|.|||||.|||||.|||||
RBAM_016260__ 809 ATTTGT----TTCGGTCGGCAAGCCGCTTATCCGATTACGAAAAGGTAGC 854
BSNT_02676___ 861 GGTTATCATGACCGGAATGGGCAGTGACGGCACTGCTGGGC-TAAAGGAC 909
.||.||.|||||.||.||||||||.|||||.||.| .|||| ||||.||.
RBAM_016260__ 855 CGTCATTATGACAGGCATGGGCAGCGACGGAACCG-AGGGCGTAAAAGAA 903
BSNT_02676___ 910 ATGCT---AACAGCCGGCAATGTGAAAGCCATTGCGGAGTCTGAAGAATC 956
||||| |||||.|||| ||.|||.|.||||||||.||.||.|||||
RBAM_016260__ 904 ATGCTCAGAACAGGCGGC---GTTAAAACGATTGCGGAATCGGACGAATC 950
BSNT_02676___ 957 TTGTGTCGTATACGGGATGCCAAAAGCTGCTGTTAAA-GCGGGTCTCATT 1005
.|||||.||.|.|||.|||||.||..|.|| |.|||| |||||.||||||
RBAM_016260__ 951 CTGTGTTGTGTTCGGAATGCCGAAGTCAGC-GATAAAGGCGGGCCTCATT 999
BSNT_02676___ 1006 CATGAGATTAAACATGTGGAAGATATCGCAGCATCCATCACAAGCTGTGT 1055
|||||||||||||||||||||||||||||.|||||||||||..|.|||||
RBAM_016260__ 1000 CATGAGATTAAACATGTGGAAGATATCGCGGCATCCATCACCGGATGTGT 1049
BSNT_02676___ 1056 GAAAAAAGAGAGGGTGTGA 1074
|||||||||||||||||||
RBAM_016260__ 1050 GAAAAAAGAGAGGGTGTGA 1068
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