Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02675 and RBAM_016250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02675___ylxH.1.9828.seq
# -bsequence dna-align/RBAM_016250___ylxH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02675___ylxH-RBAM_016250___ylxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02675___ylxH-RBAM_016250___ylxH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02675___ylxH
# 2: RBAM_016250___ylxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 642/945 (67.9%)
# Similarity: 642/945 (67.9%)
# Gaps: 105/945 (11.1%)
# Score: 2102.5
#
#
#=======================================
BSNT_02675___ 1 ATGAA--CAGATATGACCAAGCAGCAACTTTACGGGCGAAAATG-GAAAA 47
||||| |.||| ||.||||...|.|||.|...||||||| ||
RBAM_016250__ 1 ATGAAACCCGAT-----CAGGCAGAGTCATTAAGAAGGAAAATGAGA--- 42
BSNT_02675___ 48 ACGTGAGCGCGTTCTGCCAAT------------GGTTTATTCACAAAAAG 85
||||| ||.||| |.|||||....||||||
RBAM_016250__ 43 ----GAGCG------GCAAATGATCAAGCCGGAGCTTTATGAGAAAAAAG 82
BSNT_02675___ 86 CGAAGACACTTGCTGTCATCAGCGGCAAGGGCGGTGTCGGAAAATCCAAT 135
||||||||.|.||.|||||||||||.||.|||||.|||||||||||.|||
RBAM_016250__ 83 CGAAGACATTAGCCGTCATCAGCGGTAAAGGCGGCGTCGGAAAATCTAAT 132
BSNT_02675___ 136 ATTACCTTAAATATGGCACTTGCGCTCCAGGATAAAGGTAAGAAGGTGCT 185
.|.||.|||||.||||||.||||.||.|||||.|||||.||.||.|..||
RBAM_016250__ 133 TTAACATTAAACATGGCAGTTGCCCTGCAGGAAAAAGGAAAAAAAGCACT 182
BSNT_02675___ 186 GCTCATCGACCTTGATATCGGGATGGGGAACATTGATATATTAATAGGAA 235
..||||.||.|||||.|||||.|||||.|||||||||.|..|.||.||..
RBAM_016250__ 183 CATCATTGATCTTGACATCGGAATGGGCAACATTGATGTGCTGATCGGCG 232
BSNT_02675___ 236 ATTCATCGTCTGCCACGATAATTGATGTTTT----AACCGATCGTAAGCC 281
.|.|.||.||...|||.||.||||||||..| ||.|| |.|.||.
RBAM_016250__ 233 CTGCTTCTTCCCGCACCATTATTGATGTGATGGAGAATCG---GCACGCA 279
BSNT_02675___ 282 TTTGCTCCAGTCATTATCCATTGG-CCCAAAGGGTTTGCGGTATATATCA 330
||.||| ||.|||.|.|||...|| ||.|||||..|| ||.||.|||||.
RBAM_016250__ 280 TTGGCT-CAATCACTTTCCTCCGGTCCGAAAGGCCTT-CGCTACATATCC 327
BSNT_02675___ 331 GGGGGAACCGGTCTTGATGTGATGTTTC-AGCTCGATCAGAGA-AAATGG 378
||.|||||.||.|||||.|.|||.|.|| ||| .|| |||||| ||.|||
RBAM_016250__ 328 GGAGGAACGGGGCTTGAGGCGATCTATCAAGC-AGA-CAGAGAGAAGTGG 375
BSNT_02675___ 379 ACG--TTTTTTGCCAATGAACTTTCTCATGCATTAAGCCAGTTCGATTAT 426
.|| ||||.|| ||||..|||||...||.|||||||.|.||.|||||.
RBAM_016250__ 376 TCGGCTTTTATG--AATGGTCTTTCCGCTGTATTAAGCGATTTTGATTAC 423
BSNT_02675___ 427 GTGCTGTTTGATATGGGAGCGGGTTTATCAAAAGATCAACTGCCTTTTAT 476
||.||||||||||||||||||||..|.||||||||.||.|||||.|||||
RBAM_016250__ 424 GTTCTGTTTGATATGGGAGCGGGACTTTCAAAAGAACAGCTGCCGTTTAT 473
BSNT_02675___ 477 TTTATCAGCAGAAGATATTTTGATTATAACAACTCCCGAGCCGACGGCCA 526
||||||.||.|||||.|||.|...|.|.|||||.||.|||||||||||||
RBAM_016250__ 474 TTTATCGGCGGAAGACATTCTCGCTGTGACAACGCCTGAGCCGACGGCCA 523
BSNT_02675___ 527 TTTTGGACGCATACAGCGCTGTCAAGCA-CTT--------GGTT------ 561
||.||||.||.||||||||..||||.|| ||| ||.|
RBAM_016250__ 524 TTATGGATGCCTACAGCGCGATCAAACATCTTTTGCTCGCGGATGAACGG 573
BSNT_02675___ 562 TTGACAGAAAATAAGCTTTCAATGAAGGTGGCTGTCAATCGGTGCCGTGA 611
.||||.|.|||.| |.||.||||||||...|||.|.
RBAM_016250__ 574 CTGACCGTAAACA---------------TTGCCGTCAATCGCGCCCGCGC 608
BSNT_02675___ 612 CCAAAAGGAAGGGCTTGACGCTTTTGCCCGCCTCTCCCGTACAATTCATA 661
.|||||..|.|.|||.|||.|.|....||||||.||.|.|.|.|||||.|
RBAM_016250__ 609 TCAAAAACAGGCGCTGGACACGTACAACCGCCTTTCTCATGCGATTCACA 658
BSNT_02675___ 662 TGTTTTTGGATGTTCA--GGTTCAGTTT-GCCGGTTCCGTTTCTGACGAT 708
.|||||| |.|..|| |||.| |||| |||||.|||.|..|.||.||.
RBAM_016250__ 659 CGTTTTT--AGGCGCAGGGGTGC-GTTTCGCCGGCTCCATACCCGATGAC 705
BSNT_02675___ 709 GTGATCGTGAGCAAAGCGGTTGTCGAACAGGTTCCTTTTTTCATAAAAAG 758
..|.|.||.||..||||.||..|.||.|||||.||||||||.||||||||
RBAM_016250__ 706 CCGCTAGTAAGTCAAGCCGTCATTGACCAGGTGCCTTTTTTAATAAAAAG 755
BSNT_02675___ 759 CCCTCAGGCAAAAGCCAGCCGGTCAGTCCGTATTTTAGCGGACGCCTTGT 808
.|||||.||||||||||||.||||.||||||.||.|..||||.|.|||||
RBAM_016250__ 756 TCCTCAAGCAAAAGCCAGCAGGTCCGTCCGTCTTCTGACGGATGTCTTGT 805
BSNT_02675___ 809 TT-----GGAAGAGAAGAAACGAGACACAA-AGAAGACAAACAGACATTT 852
|| ||||||.||.|||| ||| ||||||.||||.|.|||||
RBAM_016250__ 806 TTCAAACGGAAGAAAACAAAC------CAAGAGAAGAGAAACCGGCATTT 849
BSNT_02675___ 853 ATTGAGAAATTATCTTCTTTTTTAATGAGGAGGGCTTAA------ 891
|||||||.||||||||||||||||.||||||||.|||.|
RBAM_016250__ 850 ATTGAGAGATTATCTTCTTTTTTATTGAGGAGGACTTTACAGTGA 894
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