Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02671 and RBAM_016220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_02671___flhB.1.9828.seq
# -bsequence dna-align/RBAM_016220___flhB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02671___flhB-RBAM_016220___flhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02671___flhB-RBAM_016220___flhB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02671___flhB
# 2: RBAM_016220___flhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1093
# Identity: 866/1093 (79.2%)
# Similarity: 866/1093 (79.2%)
# Gaps: 23/1093 ( 2.1%)
# Score: 3371.0
#
#
#=======================================
BSNT_02671___ 1 ATGAAGCTTAGAGTTGACCTGCAGTTTTTTGCGGGAGAGAAGACAGAAAA 50
||||.|||.|||.|..|.|||||.||.|||||.||.||.||.||.||.||
RBAM_016220__ 1 ATGAGGCTCAGACTGAATCTGCAATTCTTTGCCGGTGAAAAAACGGAGAA 50
BSNT_02671___ 51 AGCAACTCCGAAAAAACGGAAGGATACGCGAAAAAAAGGGCAGGTAGCCA 100
|||.|||||||||||||||||||||||..||||.|||||.|||||.||.|
RBAM_016220__ 51 AGCCACTCCGAAAAAACGGAAGGATACAAGAAAGAAAGGACAGGTCGCGA 100
BSNT_02671___ 101 AAAGCTCGGATGTCAATACCGCCGTTTCTTTACTGGTAATATTCCTTTCG 150
||||..|||||||.|||||.|||||||||||||||.|.||.||.||||||
RBAM_016220__ 101 AAAGTACGGATGTGAATACAGCCGTTTCTTTACTGATTATCTTTCTTTCG 150
BSNT_02671___ 151 CTTATTGCAATTGGTCCGTATATGAGAGACAGGCTGCTGTCATTCATAGA 200
||.||.||..|.|||||.||||||.|.||||||||||||||.||.||..|
RBAM_016220__ 151 CTGATCGCGCTCGGTCCTTATATGCGGGACAGGCTGCTGTCCTTTATTAA 200
BSNT_02671___ 201 AACATTTTATACCGAATCGCTCACAATGAAGCTCTCAGAATCAAATGTGC 250
|||.||||||||..|||||.|..||.|..|.||.||.|.|||....||||
RBAM_016220__ 201 AACGTTTTATACGAAATCGATATCATTACATCTGTCTGCATCTGCCGTGC 250
BSNT_02671___ 251 ATACATTGTTTGTCAGCTTA---TTAAAGGATATGGGCATAATACTCGCA 297
||..|.||||.|| |..|| |.||| |||||..||.|.||.|||||.
RBAM_016220__ 251 ATGAACTGTTCGT--GGATACGGTGAAA-GATATCAGCCTCATCCTCGCG 297
BSNT_02671___ 298 CCGATTTTGCTTGTTGCTCTTGTTGCAGGAGTCGTAAGCAACTATATGCA 347
||||||.||||.||.||.|||||.|||||.|||||.|||||.||.|||||
RBAM_016220__ 298 CCGATTATGCTGGTCGCGCTTGTGGCAGGTGTCGTGAGCAATTACATGCA 347
BSNT_02671___ 348 GGTTGGGTTCT-TATTTTCTGCTGAAGTGATACAGCCTAAGCTTGAA-AA 395
|| ||||||.| |.||||||||.|||||..|..|||||.| |||||| ||
RBAM_016220__ 348 GG-TGGGTTTTCTGTTTTCTGCGGAAGTCCTCAAGCCTGA-CTTGAATAA 395
BSNT_02671___ 396 ACTGGATCCGATCAAAGGCTTTAAACGAATATACAGTATGAGGGCGATTG 445
.||....|||.|.|||||.|||||.||.||.|||||.|||||||||||||
RBAM_016220__ 396 GCTCAGCCCGCTGAAAGGATTTAAGCGGATTTACAGCATGAGGGCGATTG 445
BSNT_02671___ 446 TAGAGCTGATTAAATCAATTTTGAAAATCGTA--GTCGTCGGTTTTGCGG 493
|.||.|||.|.|||||.||||||||.|| || ||.|||||||||||.|
RBAM_016220__ 446 TTGAACTGGTCAAATCCATTTTGAAGAT--TACTGTGGTCGGTTTTGCCG 493
BSNT_02671___ 494 CTTTTGCTGTGCTTTGGCTGCATTATGGAGAAATTCTCCGGCTTCCTCTC 543
|.|||...|||||.||||||||||||||.||.||||||||.|||||.||.
RBAM_016220__ 494 CCTTTATGGTGCTCTGGCTGCATTATGGCGATATTCTCCGCCTTCCGCTT 543
BSNT_02671___ 544 CTGACACCCGAAGAGGCACTATCTTTCGTTTCAAAACTCACTTTGTGGAT 593
.||||.||.|..||.|..||..||||||||||.||.||||||.|.|||||
RBAM_016220__ 544 TTGACTCCTGCGGAAGTGCTCACTTTCGTTTCCAAGCTCACTCTTTGGAT 593
BSNT_02671___ 594 GGGACTAAGCGGTG--CAGGCGCTTTATTAATTCTTGCTGGTCTTGACTA 641
|||.|| .|||| | ||||.||||||.|..|.||.||.||.|||||.||
RBAM_016220__ 594 GGGGCT-TGCGG-GATCAGGGGCTTTAATGCTGCTGGCCGGGCTTGATTA 641
BSNT_02671___ 642 TTTATATCAGAGATTTGATTATGAGAAAAACATCAAAATGTCAAAACAAG 691
.|||||||||.|.|||||.|||||||||||.||||.|||||||||.||.|
RBAM_016220__ 642 CTTATATCAGCGTTTTGACTATGAGAAAAATATCAGAATGTCAAAGCAGG 691
BSNT_02671___ 692 ATATAAAAGACGAGTACAAAAAATCTGAAGGTGACCCGATTATTAAGTCT 741
||||||||||.||.|||||||||||.||.|||||.|||||.||||||||.
RBAM_016220__ 692 ATATAAAAGATGAATACAAAAAATCGGAGGGTGATCCGATAATTAAGTCC 741
BSNT_02671___ 742 AAAATTAAACA-AAGACAGCGGGAAATGGCGATGAGGCGGATGATGCAGG 790
||||||||.|| ||| ||||||||||||||||||||||||||||||||||
RBAM_016220__ 742 AAAATTAAGCAGAAG-CAGCGGGAAATGGCGATGAGGCGGATGATGCAGG 790
BSNT_02671___ 791 AAGTTCCAAAAGCAGATGTCATTATCACAAACCCGACTCACTATGCGATT 840
||||.||.|||||.||||||||.||.||.||||||||.||.||||||||.
RBAM_016220__ 791 AAGTGCCGAAAGCGGATGTCATCATTACCAACCCGACCCATTATGCGATA 840
BSNT_02671___ 841 GCTTTGAAATATGATGAAGAAAAAATGGACGCTCCTTATATTGTTGCAAA 890
|||||.||||||||||||.|.|||||||||||.|||||.||||||||.||
RBAM_016220__ 841 GCTTTAAAATATGATGAAAAGAAAATGGACGCCCCTTACATTGTTGCCAA 890
BSNT_02671___ 891 AGGTGTCGACCACCTTGCGTTAAAAATCAGGAAAATTGCTAAAGAGCATG 940
|||.||.|||||.||.||.||||||||||||.|.||.||.|||||.||.|
RBAM_016220__ 891 AGGGGTGGACCATCTCGCATTAAAAATCAGGCAGATCGCCAAAGAACACG 940
BSNT_02671___ 941 ATGTCATGATGGTAGAAAACAGACCGCTTGCCCGTGCGTTATATGATCAG 990
|||||||||.|.|.||||||||.|||||.||.||||||||||||||||||
RBAM_016220__ 941 ATGTCATGACGATTGAAAACAGGCCGCTCGCGCGTGCGTTATATGATCAG 990
BSNT_02671___ 991 GTGGAAATTGACCAGGCAGTGCCGGAAGAATTTTTTAAAGTTTTAGCAGA 1040
||.||.|||||||||||.|||||||||||.|||||.|||||..|.||.||
RBAM_016220__ 991 GTTGACATTGACCAGGCCGTGCCGGAAGAGTTTTTCAAAGTCATTGCGGA 1040
BSNT_02671___ 1041 AATTCTGGCTTACGTATATAAAACAAAACAAAAAGTATATTGA 1083
||||.|||||||.|||||||||||.||||||||||||||.
RBAM_016220__ 1041 AATTTTGGCTTATGTATATAAAACGAAACAAAAAGTATAG--- 1080
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