Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02670 and RBAM_016210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_02670.1.9828.seq
# -bsequence dna-align/RBAM_016210___fliR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02670-RBAM_016210___fliR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02670-RBAM_016210___fliR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02670
# 2: RBAM_016210___fliR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity: 448/783 (57.2%)
# Similarity: 448/783 (57.2%)
# Gaps: 201/783 (25.7%)
# Score: 1644.0
#
#
#=======================================
BSNT_02670 0 -------------------------------------------------- 0
RBAM_016210__ 1 ATGAATTCCATCATTGATTTATTTCCCGCTTTTTTATTGGTCTTTATCAG 50
BSNT_02670 0 -------------------------------------------------- 0
RBAM_016210__ 51 AATCTCTGCTTTTTTTGTAACGGTGCCGGTGTTCGGGCATCGGAATCTGC 100
BSNT_02670 0 -------------------------------------------------- 0
RBAM_016210__ 101 CGGCGGTTCACCGAATCGGCTTTGCTTTTTTTCTTTCGGTGATCTGCTTC 150
BSNT_02670 1 ---------------------------------------------ATGCT 5
|||||
RBAM_016210__ 151 AGCACGCTGAAACATGCGCCGGAAATAGAAATAGGGGAACAGTATATGCT 200
BSNT_02670 6 T-TTGGCGTTTAAAGAAGCTTTGGTCGGCCTATGTCTGGGTTTAATTGCT 54
| |||.| .|.|||||.||..|.||.|||.|..|.||.||..|.||.|||
RBAM_016210__ 201 TCTTGTC-ATAAAAGAGGCCGTTGTGGGCTTGAGCCTCGGGCTGATCGCT 249
BSNT_02670 55 TATATGATGATTGCCGCAGTGCAGATTGCCGGCTCGTTTATTGATTTTCA 104
|..||||||||..|.||..|.|||||.||.||.||.||||||||||||||
RBAM_016210__ 250 TTCATGATGATGACAGCCATTCAGATAGCAGGTTCCTTTATTGATTTTCA 299
BSNT_02670 105 AATGGGATTTTCAATAGCAAACGTTATTGATCCGCAAACCGGTGCACAAA 154
.|||||.|||||.||.||.||.||.||||||||||||.|.||..|.||||
RBAM_016210__ 300 GATGGGCTTTTCCATCGCCAATGTCATTGATCCGCAATCAGGAACGCAAA 349
BSNT_02670 155 GTCCGTTGATTGGCCAGTTTATCTATACGATGGCACTTTTGTTTATGCTG 204
|.|||.||||.||.||.||..|.||||||.||||.||.||.||||||||.
RBAM_016210__ 350 GCCCGCTGATCGGACAATTCGTTTATACGCTGGCGCTGTTATTTATGCTC 399
BSNT_02670 205 AGTGTCAATGCCCACCATTTGTTGCTGGATGGTATTTACTACAGCTTTCA 254
||..|.||.|||||..||.|.|||.||||.||.|||||.|||||||||||
RBAM_016210__ 400 AGCATAAACGCCCATTATCTTTTGTTGGACGGGATTTATTACAGCTTTCA 449
BSNT_02670 255 GTATATTTCAGTTGATCAGGCATTTCCGAATTTCGGCGATGAAAAGTTT- 303
||||||..|..|||||||||||||||||...||.||..||||..|.|||
RBAM_016210__ 450 GTATATCCCGCTTGATCAGGCATTTCCGTCGTTTGGAAATGATCACTTTG 499
BSNT_02670 304 GCCTATTTTATTGCGAAAAGCTTTAATGCAATGTTTATTATCGCTTTTCA 353
|.|| ||||||.||.||||||||.|||||.||||||||||||||||||||
RBAM_016210__ 500 GACT-TTTTATCGCAAAAAGCTTCAATGCCATGTTTATTATCGCTTTTCA 548
BSNT_02670 354 AATGTCAGCGCCGGTTGTGGCCAGCTTGTTTCTAGTTGATTTAGCATTAG 403
||||||.|||||||||||||||||..|||||.||||||||||.||..|.|
RBAM_016210__ 549 AATGTCTGCGCCGGTTGTGGCCAGTCTGTTTTTAGTTGATTTGGCGCTCG 598
BSNT_02670 404 GCATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTC 453
|.||||||||..||||.||.||||||.|.|||||.||.||.|||||.||.
RBAM_016210__ 599 GTATCGTGGCGAGAACGGTGCCGCAGCTGAATGTTTTCGTTGTCGGGCTT 648
BSNT_02670 454 CCTTTAAAGATCGCTGTCAGTTTCATCATGCTCATTGTATGTATGTCCGT 503
|||.|.||.||.||.||.||.||.||.|||||.||.||.||||||.|.||
RBAM_016210__ 649 CCTCTGAAAATAGCCGTGAGCTTTATTATGCTGATCGTTTGTATGGCGGT 698
BSNT_02670 504 TATCTTCGTCGTTGTCCGGAATGTTTTCAG-TTTAACGATTGAAACGATG 552
.||.||.|||||||||||.||..|.||||| .|||.|| |||||||.|||
RBAM_016210__ 699 GATGTTTGTCGTTGTCCGCAACATCTTCAGCCTTACCG-TTGAAACCATG 747
BSNT_02670 553 CGGAATCTTTTAGCATTGGTCGGTGTTTCTTAA 585
||||||||.||.||||||||||||||..|.|.|
RBAM_016210__ 748 CGGAATCTATTGGCATTGGTCGGTGTGACATGA 780
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