Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02655 and RBAM_016110

See Amino acid alignment / Visit BSNT_02655 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_02655___flgD.1.9828.seq
#    -bsequence dna-align/RBAM_016110___flgD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02655___flgD-RBAM_016110___flgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02655___flgD-RBAM_016110___flgD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02655___flgD
# 2: RBAM_016110___flgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 467
# Identity:     308/467 (66.0%)
# Similarity:   308/467 (66.0%)
# Gaps:          70/467 (15.0%)
# Score: 1044.5
# 
#
#=======================================

BSNT_02655___      1 ATGACTTCTATAAGTTCAGAATAT-----------------AA--ACTGC     31
                     .||||.||..|||..||.||.|||                 ||  |||.|
RBAM_016110__      1 TTGACATCAGTAAACTCGGATTATGCCGCGGCGGGCGCTTCAACCACTTC     50

BSNT_02655___     32 CTGAAAAAACGAACACTGTGTCGACGAAC------------AACAGCAGC     69
                           ||.||          |||.||.|            |||||||||
RBAM_016110__     51 ------AAGCG----------CGAAGAGCACCACCGCAGTAAACAGCAGC     84

BSNT_02655___     70 ------TTGGGGAAAGACGAGTTTTTAAAAATATTAATGACTCAAGTTCA    113
                           ||.|||||||||||.|||.|.||.||.||||||||.||.|||||
RBAM_016110__     85 ACGAATTTAGGGAAAGACGAATTTCTGAAGATCTTAATGACACAGGTTCA    134

BSNT_02655___    114 AAACCAAGATCCGCTTAACCCGGTTGACGATAAAGAATTTATCAGCCAGA    163
                     ||||||.||.|||||.||.||||||||.||.||||||||.||||||||||
RBAM_016110__    135 AAACCAGGACCCGCTCAATCCGGTTGATGACAAAGAATTCATCAGCCAGA    184

BSNT_02655___    164 TGGCGACTTTTTCAAGCTTGGAGCAAATGATGAATCTGAATACGACAATG    213
                     |||||||.|||||....||||||||||||||||||.||||||||||.|||
RBAM_016110__    185 TGGCGACATTTTCTTCATTGGAGCAAATGATGAATATGAATACGACGATG    234

BSNT_02655___    214 ACTCAATTCGTTGAAAACCAAGATCCGTTTACAACGTATGTTGATTGGAT    263
                     |||.||||.||.|||||.||||||||||||||.|.||||||..|.|||||
RBAM_016110__    235 ACTAAATTTGTAGAAAATCAAGATCCGTTTACGATGTATGTGAACTGGAT    284

BSNT_02655___    264 GGGAAAAGAAGT----ATCTTGGAC--TGATGGTAAAAGTGCAACAGATA    307
                     .||.|||.|.||    .||...|||  .||.||.||         .|||.
RBAM_016110__    285 CGGCAAAAATGTCACATTCAGCGACAGCGACGGGAA---------GGATC    325

BSNT_02655___    308 AAACAGGCACAGTAAGCTCTGTTAAACATTTTAAAGGAAATTATTATCTC    357
                     |.|||.||.||||.|..||.||.||.||||..||.||.|||||....|||
RBAM_016110__    326 AGACAAGCCCAGTCAATTCAGTCAAGCATTCAAACGGCAATTACGTGCTC    375

BSNT_02655___    358 GTTCTTGATGATGGGACCGAGATCAGTCC-TGCGAATGTCATGTCTGTGG    406
                     ||.|||||..|.||.|..|||.||||||| || ||||||||.|.|.||..
RBAM_016110__    376 GTGCTTGAAAACGGCAAAGAGGTCAGTCCGTG-GAATGTCACGGCCGTCA    424

BSNT_02655___    407 GACAATCATCTAAATAA    423
                     |..||.|||||||||||
RBAM_016110__    425 GCGAAACATCTAAATAA    441


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