Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02652 and RBAM_016100
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02652.1.9828.seq
# -bsequence dna-align/RBAM_016100___fliK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02652-RBAM_016100___fliK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02652-RBAM_016100___fliK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02652
# 2: RBAM_016100___fliK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1622
# Identity: 925/1622 (57.0%)
# Similarity: 925/1622 (57.0%)
# Gaps: 433/1622 (26.7%)
# Score: 2516.5
#
#
#=======================================
BSNT_02652 1 GTGAAGCTGCTTGAATTAGCGGG-------ACCTTTGC------TGCAAA 37
.|||||||||||||||||.|||| || || ||||||
RBAM_016100__ 1 TTGAAGCTGCTTGAATTAACGGGTAATCGTAC----GCAGACTGTGCAAA 46
BSNT_02652 38 CCA-CAACGGGTTCTGCCGCTAAAAACATGAA---AAGTAGCCAAGGAGT 83
.|| |||.|.| ||.||||| ||..|||..|||..|
RBAM_016100__ 47 ACAGCAATGTG-------------AAGATGAATGTAAACAGCTTAGGTCT 83
BSNT_02652 84 TTTTCAAAACTGGCTTATGTCTG------------------AGGCTGGAT 115
.|||||.||||||||..||||.| ||.|.|||
RBAM_016100__ 84 ATTTCAGAACTGGCTCCTGTCGGAAATCACTTCTCCCCGGCAGCCCGGA- 132
BSNT_02652 116 TGAAGGAACTCTCAGAACAAG-GAAAGGGTACTCCTAATTCCGAAGATCA 164
||.|.||| .|.|||||| || ||.|| |
RBAM_016100__ 133 -GATGAAAC---AAAAACAAGTGA-----------------CGCAG---A 158
BSNT_02652 165 GCTTTTAGCA-GATGCGCTTA---AAAAGATCGGTGAATGGCTAAATGCA 210
||| |.| ||||| |||| ||| ||||||||.|||||.||.||.
RBAM_016100__ 159 GCT----GAATGATGC-CTTATCGAAA--ATCGGTGATTGGCTGAAAGCC 201
BSNT_02652 211 AGTCCTGAAGATCAAGA----CAAACAAAA----TGC-----------GA 241
.|.||.||||||.|||| ||...|||| ||| .|
RBAM_016100__ 202 GGCCCGGAAGATAAAGAATTGCAGCTAAAACAGCTGCTTGAGGCGGTAAA 251
BSNT_02652 242 ATCTTTTGCAAACATTAAGCAAA-CTGACAGG--GAAACAATTGGATGCG 288
|.||.||| |||.||| |.||| || |||||| ||.
RBAM_016100__ 252 AGCTCTTG--------AAGGAAAGCAGAC-GGCTGAAACA-------GCT 285
BSNT_02652 289 AATGCT---CTGCAA-ATGTTGCAAAATCTTTTGCAAGCAGTTAAATCAA 334
.||.|| .||.|| |..||||..|||||.||| |||
RBAM_016100__ 286 CATCCTTTATTGAAACAGCTTGCCGAATCTGTTG-AAG------------ 322
BSNT_02652 335 AAATGTCAGGCGGGACGGATCAGTTGCTCACAG-ATACGGAGAAAATCTT 383
|.||||.| |||||| ..|||| ||..||
RBAM_016100__ 323 ACATGTTA-GCGGGA------------AAACAGCATGGGG---------- 349
BSNT_02652 384 TTCAGAAG-CTAAAACGGCTCTGAGTGCCAATGATTCT------------ 420
.|||| ||.||||||.| |.||| .||||||
RBAM_016100__ 350 ---TGAAGCCTGAAACGGAT----GAGCC--GGATTCTTCCGCAAAAGAC 390
BSNT_02652 421 ---GCTTCTGACATTAATGGA-GCACTGAAGTCTGATACAGAG------- 459
|.||| |.|||| ||| ||.|| |||.| ||.|
RBAM_016100__ 391 GGGGATTC---CGTTAA-GGATGCGCT------TGAGA-AGGGGCTGCTT 429
BSNT_02652 460 --CAATCAAATCATGAAAATGAAGTATCCGAGCCTGCTAAAGAGCTTATC 507
||.|||| |||| ||| ||||
RBAM_016100__ 430 TTCATTCAA-----------GAAG---CCG----------------TATC 449
BSNT_02652 508 TATATCCAGATGTTCATTAGCCAGCTCGTAGAAGGGAATAATCTGACTGA 557
||||.|.|||| ||.||| ||.||| |.|||.||||
RBAM_016100__ 450 -----CCAGCTCTTCA-----CATCTC--AGCAGG-----AACTGCCTGA 482
BSNT_02652 558 TCGCGGGAATGGCAATGAAGCTCATGCCATTTACCAAAATGGAGATCAAT 607
..|||.|.| ||||| |.||..|||||||..|.||.|
RBAM_016100__ 483 CAGCGCGCA-GGCAA--------AGGCGGTTTACCAGGAAGGCG------ 517
BSNT_02652 608 TCC--TTTCT-----GCATTAGAAAAGA-AGGGTGTATCTCAACAAATAA 649
|| |||.| ||||| |||||.| |.|||||..|..|.|...|.|
RBAM_016100__ 518 -CCCGTTTATTAGAGGCATT-GAAAAAACAAGGTGTCCCAGACCGCGTGA 565
BSNT_02652 650 TTCAGGATCTTAAACAG-CAAATATTCACTAAAGCTGAGTCAAGTTCAAA 698
||||.||.||....||| ||..|.||| |.|||...||.||....||.||
RBAM_016100__ 566 TTCAAGACCTGCGGCAGACATTTTTTC-CGAAAAACGAATCTGCATCTAA 614
BSNT_02652 699 ACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGG 748
|||||||||.||||||||..|.||||||||.||.|||||||||.|...||
RBAM_016100__ 615 ACTTTACTCCATGACAGCCGCTGAGCTGAAGAGCTTTCAAAGCGTCGCGG 664
BSNT_02652 749 ATCAAATGTCTATG-----CTTCCTCAAAAAGGGACCAAA-GAATGGAGT 792
|.||..| || |||.||| ||||||||.|||| ||||||..|
RBAM_016100__ 665 AGCAGCT-----TGCGGGCCTTTCTC-AAAAGGGAACAAAGGAATGGGAT 708
BSNT_02652 793 TTAGCTGAAAGCCAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATC 842
.|.|||||||...|||||||||..||..|||||||..|||||||.|||||
RBAM_016100__ 709 ATGGCTGAAACTGAGCTGAAAGTTTTTGTGTTATCTCAATCATCTGAATC 758
BSNT_02652 843 ATCACAAGACT---TTGGGAAGCGTGTTCTCACACCGCTCTCGCAGAGTT 889
|||.|||||.| ..||||| ..||||
RBAM_016100__ 759 ATCCCAAGAGTCAGCCGGGAA--------------------AACAGA--- 785
BSNT_02652 890 TATCCAGCAAAA---ATGCATCGGATGTTTCTGGAAGTATTCA------- 929
.|||||||| ..||| || ||||| |||
RBAM_016100__ 786 ---ACAGCAAAACGGCGGCA-CG---GTTTC---------TCACGCAAAG 819
BSNT_02652 930 --GCCTGTAGATAGTAAA---TCAGGACTCCAAATGCTGTTTTCGGG--- 971
|||| ||.||.||| ||.|.| ||.||.|||||||||||
RBAM_016100__ 820 GCGCCT---GACAGCAAATTGTCTGCA---CATATACTGTTTTCGGGAAC 863
BSNT_02652 972 --------TTATCGG-----AGCATA-----GGAGGAGTACAAACACTTG 1003
||..||| ||||.| |.|||||
RBAM_016100__ 864 GAGAAGCCTTGCCGGCATTCAGCAAACGTCCGCAGGAG------------ 901
BSNT_02652 1004 ATCTG--CAGCAGATGTCATCTGATATACCAAATACCGAAACAAAAACGG 1051
||| ||||||..|.|| ||||..|||.||.
RBAM_016100__ 902 --CTGAACAGCAGCCGGCA------------------GAAAATAAACCGT 931
BSNT_02652 1052 TGGCTGATCAAGTGATTAATGCG--TGGAAGCAGATGAAATATACGCCTT 1099
|..|.|||||.||.|| |.||| |||||.|||||||||||.|||||||
RBAM_016100__ 932 TAACGGATCAGGTTAT--AAGCGGCTGGAAACAGATGAAATACACGCCTT 979
BSNT_02652 1100 TCGGCAGATCGACGGGAAGTTTCACTATTCGGCTGAACCCTGAACATTTA 1149
||||.|.|.|.||.|||||.||.||.|||||.||.||.||.||..|..|.
RBAM_016100__ 980 TCGGGAAAACAACCGGAAGCTTTACGATTCGTCTTAATCCCGAGAACCTC 1029
BSNT_02652 1150 GGATTTGTCACAATCAAGCTGACAAATGAAAATGGAATGTTTCAGAGTAA 1199
||||||||||||||.|||.|||||||.|||||.||.||||||||.||.||
RBAM_016100__ 1030 GGATTTGTCACAATTAAGGTGACAAACGAAAACGGGATGTTTCAAAGCAA 1079
BSNT_02652 1200 AATCATAGCATCTAGCCAATCAGCAAAAGAATTGCTTGAACAGCATCTTC 1249
|||.||.|||||.|||||.||.||.|||||..||||.|||||||||||||
RBAM_016100__ 1080 AATAATCGCATCCAGCCAGTCCGCGAAAGAGCTGCTGGAACAGCATCTTC 1129
BSNT_02652 1250 CTCAGCTGAAGCAATCATTGCCGAATATGGCCGTCCAAATTGACCGTTTT 1299
||||||||||.||.||..|.|||||||| |.||.|||..|.|||||||||
RBAM_016100__ 1130 CTCAGCTGAAACAGTCGCTTCCGAATAT-GTCGGCCAGGTCGACCGTTTT 1178
BSNT_02652 1300 ACTCTTCCGGTCCAAAGCGGGGAT---CAGCCGATATACGGCCAGCTTGC 1346
||..|.||..|.|||||||||||| |||||..|.|||||.|||...||
RBAM_016100__ 1179 ACAGTCCCCCTTCAAAGCGGGGATCAGCAGCCTGTTTACGGGCAGACGGC 1228
BSNT_02652 1347 TGATGAACAGAAACAGCAGCAAGAGGGGCAGAGACAGCA-AAGA--CAGA 1393
.|||.|..|.|||||||||||..||||.||||||.|||| |||| |||
RBAM_016100__ 1229 CGATCACAATAAACAGCAGCATCAGGGACAGAGAGAGCAGAAGAACCAG- 1277
BSNT_02652 1394 AAAAGCAATCAAATGATTTTGGCGATCTGCTCGATGAAGTGTCGATGGTT 1443
.||||.|||...|||||.||.|||.||||.||.||..|.||..|...|
RBAM_016100__ 1278 --CAGCAGTCAGGCGATTTCGGAGATATGCTGGAGGAGCTTTCTCTCAAT 1325
BSNT_02652 1444 GAAATGGAGGAAGAAGA-ATGA 1464
|||||||||||||||.| .|||
RBAM_016100__ 1326 GAAATGGAGGAAGAATAGTTGA 1347
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