Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02650 and RBAM_016090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02650___ylxF.1.9828.seq
# -bsequence dna-align/RBAM_016090___ylxF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02650___ylxF-RBAM_016090___ylxF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02650___ylxF-RBAM_016090___ylxF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02650___ylxF
# 2: RBAM_016090___ylxF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 656
# Identity: 451/656 (68.8%)
# Similarity: 451/656 (68.8%)
# Gaps: 82/656 (12.5%)
# Score: 1488.0
#
#
#=======================================
BSNT_02650___ 1 ATGTCCGGCAAAAAG-AAAGA-ATCAGGTAAGTTCCGTTCGGTTTTGCTT 48
|||.||| |.|||| ||||| |||.||.||||||.||||..|..|||||
RBAM_016090__ 1 ATGGCCG--ATAAAGAAAAGAGATCTGGAAAGTTCGGTTCAATCCTGCTT 48
BSNT_02650___ 49 ATCATTATCCTCCCGCTGATGTTTCTATTAATCGCAGGGGGGATTGTTCT 98
.|.||.||..||||||||||.|||||..|.||||..|...|.||..|.||
RBAM_016090__ 49 TTTATCATGATCCCGCTGATTTTTCTGATCATCGTCGCAAGCATCATCCT 98
BSNT_02650___ 99 TTGGGCTGCTGGTATCAATGTCATAAAGCCGATACAGGATGCTGCGGCAA 148
|||||||||.||..|..||||.||.||||||||.|||||..|.||.||.|
RBAM_016090__ 99 TTGGGCTGCCGGCGTTGATGTAATGAAGCCGATTCAGGAAACAGCCGCTA 148
BSNT_02650___ 149 AAACGCCGGTTCTTAAAGAATTGGTCCCTGAAACCGA---AAATAAAAAA 195
|||||||.|||.|.|||||||||||.||.|||| ||| ||||.||||
RBAM_016090__ 149 AAACGCCTGTTTTAAAAGAATTGGTTCCCGAAA-CGAAAGAAATGAAAA- 196
BSNT_02650___ 196 GGCGCAGC-----ATCAAGTAAGGATAG-CAGTAATACGGCAGCTCTGGA 239
||||.|| |.|| .||||| || ||| .|||||..||||.||
RBAM_016090__ 197 -GCGCGGCGGAAAAGCA--GAAGGA-AGACAG---AACGGCTTCTCTTGA 239
BSNT_02650___ 240 AAAGACCATTAAGGATCAAAAAAGTGAAATCAGTATATTGAATAAAGATT 289
|||||||||.|||||.||||||||||||||.|..||.|||||||||||||
RBAM_016090__ 240 AAAGACCATAAAGGAACAAAAAAGTGAAATTAACATTTTGAATAAAGATT 289
BSNT_02650___ 290 TAGAAACAAGTAAATCAGAAATCGATAGGCTCAATCAAAAGATCCGTTCA 339
||||.|||||.||.||.||||||||||..||.|||||.||.|||||||||
RBAM_016090__ 290 TAGACACAAGCAAGTCCGAAATCGATAATCTGAATCAGAAAATCCGTTCA 339
BSNT_02650___ 340 CTTGAAA-AGACGGCTGAGGATCAAAAAAAGTCATCAGAAGATCATACTG 388
| ||||| ||...|||| ||.|| ||.|||||.|..| .|
RBAM_016090__ 340 C-TGAAACAGGAAGCTG---------AACAG-CAGCAGAAAACGA---AG 375
BSNT_02650___ 389 AAGGATCAGCAGACTCGAAA------GCTTC---TT----CTGAAAATGA 425
|.|||| ||..||||| |||.| || |.||||| ||
RBAM_016090__ 376 ACGGAT-----GAAACGAAAAAAGACGCTGCGGATTCAGCCGGAAAA-GA 419
BSNT_02650___ 426 CAAAGTGATCAGTGTGTACAAAAGCATGGACAGCGGAAAGGCTGCTAAAA 475
.|||.||||||...|.||.|||||.|||||||||||.||.||.||.|..|
RBAM_016090__ 420 TAAAATGATCAACATCTATAAAAGTATGGACAGCGGTAAAGCGGCAAGCA 469
BSNT_02650___ 476 TTATTGCCCAATTAAAG------GAGCAAGAAGCACTGAAAATATTGAAT 519
||||.| ||||| ||..|||||||.||..|.||.||.||.
RBAM_016090__ 470 TTATCG------TAAAGCTGAAAGAAAAAGAAGCCCTCGATATTTTAAAC 513
BSNT_02650___ 520 GGCCTAAGCAAAAAGCAGCTTGCTGACATATTGGCGAAAATGACTCCTGA 569
||..||||.|||||||||||||||||.||.|||.||||||||||||||||
RBAM_016090__ 514 GGATTAAGTAAAAAGCAGCTTGCTGAAATCTTGACGAAAATGACTCCTGA 563
BSNT_02650___ 570 GCAAGCAGCAACCTATACAGAAAAAAT---TGCTGCCAGCCAAGAATAG- 615
.|||||.||.|..||||||||||||.| .||||.|.| .||||.
RBAM_016090__ 564 ACAAGCGGCTAAATATACAGAAAAACTATCCGCTGACGG----AAATAAG 609
BSNT_02650___ 615 ------ 615
RBAM_016090__ 610 GAGTGA 615
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