Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02646 and RBAM_016060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02646.1.9828.seq
# -bsequence dna-align/RBAM_016060___fliH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02646-RBAM_016060___fliH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02646-RBAM_016060___fliH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02646
# 2: RBAM_016060___fliH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 768
# Identity: 450/768 (58.6%)
# Similarity: 450/768 (58.6%)
# Gaps: 156/768 (20.3%)
# Score: 1473.0
#
#
#=======================================
BSNT_02646 1 TTGTCTAATATCATTAAACAAGAATCATCTATTTCTCCACAAAAGGAAAA 50
RBAM_016060__ 0 -------------------------------------------------- 0
BSNT_02646 51 AAGAAAACTTTCTATACAAGAGGTGCGTATTGATCATTCTCACCTTTTGC 100
RBAM_016060__ 0 -------------------------------------------------- 0
BSNT_02646 101 AGGCTGAAGAGAACTCGGAGGCGCTTATGGC-----CCGAGTGAAAGAGG 145
||||| || ||||..|
RBAM_016060__ 1 --------------------------ATGGCTTTTGCC-----AAAGCAG 19
BSNT_02646 146 AAGCTGACCGGATTTCTGAGCAGGCAAACAGTCATATAGAAAATATTCGC 195
||||.|||.||.|.|||||..|.||.||.|.|||..|.||..|.|.||..
RBAM_016060__ 20 AAGCCGACAGGGTGTCTGAAGAAGCGAAAAATCAATTTGAGCACACTCTT 69
BSNT_02646 196 CGTCAAATCGAGCAGGAGAAAAACGATTGGGCGGCTGAAAAACAGAAGCT 245
||.||.||.||..|.|||||||||...|||||||..|||||||| |||.|
RBAM_016060__ 70 CGGCAGATTGAAGAAGAGAAAAACCGCTGGGCGGAAGAAAAACA-AAGAT 118
BSNT_02646 246 T-ATTGAAGAAGCAAAAACCGAGGGCTTTGAACAAGGAGTAGCGTTGGGC 294
| ||.|||||||||||..|.||.||.|.||||.||||..|.||.|||||.
RBAM_016060__ 119 TGATAGAAGAAGCAAAGGCAGAAGGATATGAAGAAGGCATGGCATTGGGA 168
BSNT_02646 295 AAAGCTGAGGCATTGCAA---CAGTATGCCGAACTGATCGGCCAAGCGAA 341
|||||.||||| .||| .|.||.|||.|.||.|||.|||..||.||
RBAM_016060__ 169 AAAGCCGAGGC---TCAAGCTGAATACGCCAATCTCATCAGCCGGGCCAA 215
BSNT_02646 342 ---CAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAG 388
|..||| .||||||.|.|||.|..|.||.|||||.||.||.|||.
RBAM_016060__ 216 TGCCGTTAT---GGAAATGGCGAGACAGTCAGTCGAGGAAAAACTGGAAA 262
BSNT_02646 389 ACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTT 438
.||||.|.|||||||||.||||||||.|||||||.||.||.||||||||.
RBAM_016060__ 263 GCGCTGAGGAAGAAATCATTGAGCTTTCCGTTGCGCTCGCTAAAAAAGTA 312
BSNT_02646 439 TGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACA 488
||||.||||||...||||||||||||||||||.||.|||||.||..||||
RBAM_016060__ 313 TGGCGGCAAAAAAGTGATGATAAAGAGGCTTTTCTTCTGCTGGTCAAACA 362
BSNT_02646 489 GGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATC 538
|||..||..||||||.||.||.|||||.||.||.||.||.|||||.||.|
RBAM_016060__ 363 GGTAGTAGCCGAAGTAAAAGATTATGATGACATCTCCATCTATGTGGACC 412
BSNT_02646 539 CATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCCAGCAGCTT 588
|..|.||.||||.|||..|...||||||.|..||.|||||.||||||||.
RBAM_016060__ 413 CTGAATATTATGTGACGGTTCATCAGCATATGGACGAAATTCAGCAGCTG 462
BSNT_02646 589 CTTTATAAAGAATGCCGGCTTGGCATATATGCTGATGAAAAAGCTCAAAA 638
.|.||.|||||||||.|..|..||.|||||||.|||||||||||....||
RBAM_016060__ 463 TTATACAAAGAATGCAGATTAAGCTTATATGCCGATGAAAAAGCCGCGAA 512
BSNT_02646 639 AGGAACCTGTTATATTGAAACTCCTTTTGGCAGGGTAGATGCGAGTGTTG 688
.|||||.||.|..||.||||||||.||.||..|.||.|||||..|..|.|
RBAM_016060__ 513 GGGAACGTGCTCGATAGAAACTCCGTTCGGACGTGTTGATGCAGGCATAG 562
BSNT_02646 689 ACACACAATTGATGCAATTGAAAG-ATAAACTTCTGACAGCGCTGGAAGC 737
||||.||..|||||||||| |||| |.||||||.|.||.|||||.||.||
RBAM_016060__ 563 ACACCCAGCTGATGCAATT-AAAGCAAAAACTTTTAACGGCGCTTGAGGC 611
BSNT_02646 738 AGGTGC--AGCTGAATGA 753
.||.|| ||| |||||
RBAM_016060__ 612 GGGAGCGGAGC--AATGA 627
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