Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02644 and RBAM_016040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:31
# Commandline: needle
# -asequence dna-align/BSNT_02644.1.9828.seq
# -bsequence dna-align/RBAM_016040___fliF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02644-RBAM_016040___fliF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02644-RBAM_016040___fliF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02644
# 2: RBAM_016040___fliF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1645
# Identity: 757/1645 (46.0%)
# Similarity: 757/1645 (46.0%)
# Gaps: 707/1645 (43.0%)
# Score: 2894.0
#
#
#=======================================
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 1 ATGAATCGTACTCTAATGCAAATGAAAACCAAAACGGCAGCGTTTTGGAA 50
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 51 CAACAGATCAAAAACACAGAAGATACTCATGGTAAGCGGCTTGGCCGCAT 100
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 101 TCATTATTTTACTCATCGTCGTTATTATTTTTACTTCGTCTGAAAAGATG 150
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 151 GTGCCTCTTTATAAAGATTTGTCCGCAGAAGAAGCGGGGAAGATTAAAGA 200
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 201 AGAGCTCGATACGAAAAAGGTGTCTTCTGAACTTGCTGACGGCGGCACGG 250
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 251 TCATTAAGGTTCCTGAGAGCCAAGTGGATTCGCTTAAAGTCCAGCTTGCC 300
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 301 GCGGAAGGCCTGCCGAAAACGGGATCAATTGATTATTCGTTTTTCGGACA 350
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 351 AAATGCGGGCTTCGGCCTGACGGATAATGAGTTTGACGTTTTAAAGGTTG 400
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 401 AGGCGACTCAGACCGAATTGTCAAACCTGATAAATGAAATGGACGGTATT 450
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 451 AAAAGCTCGAAGGTCATGATCAATATGCCGAAAGAAGCCGTGTTCGTCGG 500
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 501 TGAAGATCAGCCGGCAGCGTCCGCATCAATCGTTTTGCAGATGAAACCGG 550
BSNT_02644 0 -------------------------------------------------- 0
RBAM_016040__ 551 GCTACTCGCTTGATCAAAACCAGATCAACGGGCTGTACCATCTCGTTTCT 600
BSNT_02644 1 ---------------------------------------ATGGACCAAAA 11
|||||.|||||
RBAM_016040__ 601 AAAAGTGTTCCGAACTTAAAAGAAGATAATATCGTCATAATGGATCAAAA 650
BSNT_02644 12 TTCTACATACTACGACAAATCAGACAGCGATGCAGGGTCCTACGCGGATA 61
|||||||||.||.||||||...|||||||.||||||||||....|.||.|
RBAM_016040__ 651 TTCTACATATTATGACAAAAGTGACAGCGGTGCAGGGTCCGTTTCTGACA 700
BSNT_02644 62 GTTATTCTTCTCAGCAAGGAATTAAGTCTCAAGTTGAAAAAGACATTCAA 111
|||||.|||||||||||||.||||||||.||.||.|||||.|||||||||
RBAM_016040__ 701 GTTATGCTTCTCAGCAAGGTATTAAGTCGCAGGTCGAAAAGGACATTCAA 750
BSNT_02644 112 AAACATGTACAGTCACTGCTGGGTACGATGATGGGCCAAGATAAAGTCGT 161
||||||||.|||||||||||.||.||.||||||||.||.|||||.|||||
RBAM_016040__ 751 AAACATGTTCAGTCACTGCTCGGCACAATGATGGGGCAGGATAAGGTCGT 800
BSNT_02644 162 TGTCTCCGTTACAGCAGACATTGATTTCACAAAAGAAAATCGGACAGAAG 211
|||.|||||.||.||.||..||||.|||||.||.|||||.||.||.||||
RBAM_016040__ 801 TGTTTCCGTGACGGCGGATGTTGACTTCACGAAGGAAAAACGCACTGAAG 850
BSNT_02644 212 ACATTGTCGAACCTGTGGATAAAGAAAACATGGAAGGCATTGCAGTCAGC 261
|||.||||||||||||.||||||||.||||||||||||||.||.||.|||
RBAM_016040__ 851 ACACTGTCGAACCTGTCGATAAAGATAACATGGAAGGCATAGCGGTAAGC 900
BSNT_02644 262 GCTGAAAAGGTATCTGAAACATATCAGGGCGACGGTGCAGCCAACGGCGG 311
||.|||||.||..|.|||||.|||.|.||||||||.||.|||||||||||
RBAM_016040__ 901 GCCGAAAAAGTTGCGGAAACGTATAAAGGCGACGGCGCGGCCAACGGCGG 950
BSNT_02644 312 AACTGCCGGAACCGGCGAGGAAG--ATGTAACA-----AATTATAAGGCT 354
.||.|||||||| .||||| ||| ||| ||.||| ||.
RBAM_016040__ 951 CACGGCCGGAAC-----GGGAAGCAATG--ACACCGCGAACTAT---GCC 990
BSNT_02644 355 GA---------CGGTGAAAATACCGAAAGCGGAAACTACGAAAAAAACAG 395
|| ||||..|| |.|||||..||||||||||||.|||
RBAM_016040__ 991 GAGACAAACGGCGGTTCAA------ACAGCGGGGACTACGAAAAAAGCAG 1034
BSNT_02644 396 CAACAAAATCAATTACGAGGTTAACCGAATTCATAAAGAAATCGCTGAAA 445
|||.||||||||.||.||.||.|||||.|||||||||||||||||.||||
RBAM_016040__ 1035 CAATAAAATCAACTATGAAGTCAACCGCATTCATAAAGAAATCGCGGAAA 1084
BSNT_02644 446 GTCCTTATAAGGTCAGAGATTTAGGGATTCAAGTAATGGTAGAGCCGCCT 495
|.||.|||||.||..|.||||||||.|||||.||.|||||.|||||||||
RBAM_016040__ 1085 GCCCGTATAAAGTGCGTGATTTAGGCATTCAGGTCATGGTGGAGCCGCCT 1134
BSNT_02644 496 GATGCCAAAAACACAGCGTCGCTATCAACTGAAAGACAGGATGAAATACA 545
.||.|.|||||..|.||.||..|||||.|..|.|||||||.|||.|||||
RBAM_016040__ 1135 AATCCGAAAAATGCCGCTTCCTTATCAGCACAGAGACAGGCTGATATACA 1184
BSNT_02644 546 AAAAATCCTTT--CAACTGTAGTCAGAACATCTTTGGATAAAGATGAAAC 593
.||.|| ||| .|||.||.||||||||.|||.|.||||||.|.|||||
RBAM_016040__ 1185 GAAGAT--TTTAGGAACGGTCGTCAGAACGTCTCTTGATAAAAACGAAAC 1232
BSNT_02644 594 GCAAAACCAGAATTTATCTGATGCTGATATCAATAATAAGATTGTTGTCT 643
||||||.||.||..|..|.||...|||||||||.|||||.||.|||||.|
RBAM_016040__ 1233 GCAAAATCAAAACCTGACAGACAATGATATCAACAATAAAATCGTTGTAT 1282
BSNT_02644 644 CCGTTCAGCCATTCGACGGCAAAGTCAA-TTTGGATACAAATACGGAAAA 692
||||||||||.||.||||| |||..||| ..||.|.|||.||.|||.|.|
RBAM_016040__ 1283 CCGTTCAGCCGTTTGACGG-AAAAACAAGCCTGAACACAGATTCGGCACA 1331
BSNT_02644 693 ATCCTCAGGTATCCCGCTGTGGGCATATATTGTAGGCGGTGTTTTAATCG 742
|||.||||||.|.|||.|.||||.|||.|||..||||||.||..|..|.|
RBAM_016040__ 1332 ATCTTCAGGTCTTCCGATCTGGGTATACATTACAGGCGGCGTACTGCTTG 1381
BSNT_02644 743 CAGCGATCATTGTTCTGATCATTATGCTTATCAGAAAGAAACGGGCGCAA 792
|.||.||.|||.|.||.||.|||.|.||.||||||||||||||..|.|||
RBAM_016040__ 1382 CGGCCATTATTCTGCTTATTATTCTCCTCATCAGAAAGAAACGCTCACAA 1431
BSNT_02644 793 GAGGATGAATTTGAGGAATATGAGTATGA---------------GGTTCC 827
||||||||||..||.||||||||.||||| |||||
RBAM_016040__ 1432 GAGGATGAATACGAAGAATATGAATATGAAACACCGCCCGAGCCGGTTC- 1480
BSNT_02644 828 TCAAGAACCAATCAATTTGCCTGATATCAACGAAGAGGAAAATGAAACAG 877
|| |||||||||||||||||||||.|||.||||||.|
RBAM_016040__ 1481 ----GA----------TTGCCTGATATCAACGAAGAGAAAATTGAAACGG 1516
BSNT_02644 878 CGGAATCAGTCAGACGAAAACAGCTTGAAAAGATGGCGAAAGACAAGCCG 927
..|||.|||||||||||||||||||||||||.|||||.|||||.||.|||
RBAM_016040__ 1517 AAGAAACAGTCAGACGAAAACAGCTTGAAAAAATGGCTAAAGAAAAACCG 1566
BSNT_02644 928 GAAGATTTTGCAAAACTGCTGAGAAGCTGGCTGGCCGAGGATTAG 972
|||||.|||||.|||.||||..||||||||||||.||||||||||
RBAM_016040__ 1567 GAAGACTTTGCTAAATTGCTTCGAAGCTGGCTGGACGAGGATTAG 1611
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