Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02644 and RBAM_016040

See Amino acid alignment / Visit BSNT_02644 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:31
# Commandline: needle
#    -asequence dna-align/BSNT_02644.1.9828.seq
#    -bsequence dna-align/RBAM_016040___fliF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02644-RBAM_016040___fliF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02644-RBAM_016040___fliF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02644
# 2: RBAM_016040___fliF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1645
# Identity:     757/1645 (46.0%)
# Similarity:   757/1645 (46.0%)
# Gaps:         707/1645 (43.0%)
# Score: 2894.0
# 
#
#=======================================

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__      1 ATGAATCGTACTCTAATGCAAATGAAAACCAAAACGGCAGCGTTTTGGAA     50

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__     51 CAACAGATCAAAAACACAGAAGATACTCATGGTAAGCGGCTTGGCCGCAT    100

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    101 TCATTATTTTACTCATCGTCGTTATTATTTTTACTTCGTCTGAAAAGATG    150

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    151 GTGCCTCTTTATAAAGATTTGTCCGCAGAAGAAGCGGGGAAGATTAAAGA    200

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    201 AGAGCTCGATACGAAAAAGGTGTCTTCTGAACTTGCTGACGGCGGCACGG    250

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    251 TCATTAAGGTTCCTGAGAGCCAAGTGGATTCGCTTAAAGTCCAGCTTGCC    300

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    301 GCGGAAGGCCTGCCGAAAACGGGATCAATTGATTATTCGTTTTTCGGACA    350

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    351 AAATGCGGGCTTCGGCCTGACGGATAATGAGTTTGACGTTTTAAAGGTTG    400

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    401 AGGCGACTCAGACCGAATTGTCAAACCTGATAAATGAAATGGACGGTATT    450

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    451 AAAAGCTCGAAGGTCATGATCAATATGCCGAAAGAAGCCGTGTTCGTCGG    500

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    501 TGAAGATCAGCCGGCAGCGTCCGCATCAATCGTTTTGCAGATGAAACCGG    550

BSNT_02644         0 --------------------------------------------------      0
                                                                       
RBAM_016040__    551 GCTACTCGCTTGATCAAAACCAGATCAACGGGCTGTACCATCTCGTTTCT    600

BSNT_02644         1 ---------------------------------------ATGGACCAAAA     11
                                                            |||||.|||||
RBAM_016040__    601 AAAAGTGTTCCGAACTTAAAAGAAGATAATATCGTCATAATGGATCAAAA    650

BSNT_02644        12 TTCTACATACTACGACAAATCAGACAGCGATGCAGGGTCCTACGCGGATA     61
                     |||||||||.||.||||||...|||||||.||||||||||....|.||.|
RBAM_016040__    651 TTCTACATATTATGACAAAAGTGACAGCGGTGCAGGGTCCGTTTCTGACA    700

BSNT_02644        62 GTTATTCTTCTCAGCAAGGAATTAAGTCTCAAGTTGAAAAAGACATTCAA    111
                     |||||.|||||||||||||.||||||||.||.||.|||||.|||||||||
RBAM_016040__    701 GTTATGCTTCTCAGCAAGGTATTAAGTCGCAGGTCGAAAAGGACATTCAA    750

BSNT_02644       112 AAACATGTACAGTCACTGCTGGGTACGATGATGGGCCAAGATAAAGTCGT    161
                     ||||||||.|||||||||||.||.||.||||||||.||.|||||.|||||
RBAM_016040__    751 AAACATGTTCAGTCACTGCTCGGCACAATGATGGGGCAGGATAAGGTCGT    800

BSNT_02644       162 TGTCTCCGTTACAGCAGACATTGATTTCACAAAAGAAAATCGGACAGAAG    211
                     |||.|||||.||.||.||..||||.|||||.||.|||||.||.||.||||
RBAM_016040__    801 TGTTTCCGTGACGGCGGATGTTGACTTCACGAAGGAAAAACGCACTGAAG    850

BSNT_02644       212 ACATTGTCGAACCTGTGGATAAAGAAAACATGGAAGGCATTGCAGTCAGC    261
                     |||.||||||||||||.||||||||.||||||||||||||.||.||.|||
RBAM_016040__    851 ACACTGTCGAACCTGTCGATAAAGATAACATGGAAGGCATAGCGGTAAGC    900

BSNT_02644       262 GCTGAAAAGGTATCTGAAACATATCAGGGCGACGGTGCAGCCAACGGCGG    311
                     ||.|||||.||..|.|||||.|||.|.||||||||.||.|||||||||||
RBAM_016040__    901 GCCGAAAAAGTTGCGGAAACGTATAAAGGCGACGGCGCGGCCAACGGCGG    950

BSNT_02644       312 AACTGCCGGAACCGGCGAGGAAG--ATGTAACA-----AATTATAAGGCT    354
                     .||.||||||||     .|||||  |||  |||     ||.|||   ||.
RBAM_016040__    951 CACGGCCGGAAC-----GGGAAGCAATG--ACACCGCGAACTAT---GCC    990

BSNT_02644       355 GA---------CGGTGAAAATACCGAAAGCGGAAACTACGAAAAAAACAG    395
                     ||         ||||..||      |.|||||..||||||||||||.|||
RBAM_016040__    991 GAGACAAACGGCGGTTCAA------ACAGCGGGGACTACGAAAAAAGCAG   1034

BSNT_02644       396 CAACAAAATCAATTACGAGGTTAACCGAATTCATAAAGAAATCGCTGAAA    445
                     |||.||||||||.||.||.||.|||||.|||||||||||||||||.||||
RBAM_016040__   1035 CAATAAAATCAACTATGAAGTCAACCGCATTCATAAAGAAATCGCGGAAA   1084

BSNT_02644       446 GTCCTTATAAGGTCAGAGATTTAGGGATTCAAGTAATGGTAGAGCCGCCT    495
                     |.||.|||||.||..|.||||||||.|||||.||.|||||.|||||||||
RBAM_016040__   1085 GCCCGTATAAAGTGCGTGATTTAGGCATTCAGGTCATGGTGGAGCCGCCT   1134

BSNT_02644       496 GATGCCAAAAACACAGCGTCGCTATCAACTGAAAGACAGGATGAAATACA    545
                     .||.|.|||||..|.||.||..|||||.|..|.|||||||.|||.|||||
RBAM_016040__   1135 AATCCGAAAAATGCCGCTTCCTTATCAGCACAGAGACAGGCTGATATACA   1184

BSNT_02644       546 AAAAATCCTTT--CAACTGTAGTCAGAACATCTTTGGATAAAGATGAAAC    593
                     .||.||  |||  .|||.||.||||||||.|||.|.||||||.|.|||||
RBAM_016040__   1185 GAAGAT--TTTAGGAACGGTCGTCAGAACGTCTCTTGATAAAAACGAAAC   1232

BSNT_02644       594 GCAAAACCAGAATTTATCTGATGCTGATATCAATAATAAGATTGTTGTCT    643
                     ||||||.||.||..|..|.||...|||||||||.|||||.||.|||||.|
RBAM_016040__   1233 GCAAAATCAAAACCTGACAGACAATGATATCAACAATAAAATCGTTGTAT   1282

BSNT_02644       644 CCGTTCAGCCATTCGACGGCAAAGTCAA-TTTGGATACAAATACGGAAAA    692
                     ||||||||||.||.||||| |||..||| ..||.|.|||.||.|||.|.|
RBAM_016040__   1283 CCGTTCAGCCGTTTGACGG-AAAAACAAGCCTGAACACAGATTCGGCACA   1331

BSNT_02644       693 ATCCTCAGGTATCCCGCTGTGGGCATATATTGTAGGCGGTGTTTTAATCG    742
                     |||.||||||.|.|||.|.||||.|||.|||..||||||.||..|..|.|
RBAM_016040__   1332 ATCTTCAGGTCTTCCGATCTGGGTATACATTACAGGCGGCGTACTGCTTG   1381

BSNT_02644       743 CAGCGATCATTGTTCTGATCATTATGCTTATCAGAAAGAAACGGGCGCAA    792
                     |.||.||.|||.|.||.||.|||.|.||.||||||||||||||..|.|||
RBAM_016040__   1382 CGGCCATTATTCTGCTTATTATTCTCCTCATCAGAAAGAAACGCTCACAA   1431

BSNT_02644       793 GAGGATGAATTTGAGGAATATGAGTATGA---------------GGTTCC    827
                     ||||||||||..||.||||||||.|||||               ||||| 
RBAM_016040__   1432 GAGGATGAATACGAAGAATATGAATATGAAACACCGCCCGAGCCGGTTC-   1480

BSNT_02644       828 TCAAGAACCAATCAATTTGCCTGATATCAACGAAGAGGAAAATGAAACAG    877
                         ||          |||||||||||||||||||||.|||.||||||.|
RBAM_016040__   1481 ----GA----------TTGCCTGATATCAACGAAGAGAAAATTGAAACGG   1516

BSNT_02644       878 CGGAATCAGTCAGACGAAAACAGCTTGAAAAGATGGCGAAAGACAAGCCG    927
                     ..|||.|||||||||||||||||||||||||.|||||.|||||.||.|||
RBAM_016040__   1517 AAGAAACAGTCAGACGAAAACAGCTTGAAAAAATGGCTAAAGAAAAACCG   1566

BSNT_02644       928 GAAGATTTTGCAAAACTGCTGAGAAGCTGGCTGGCCGAGGATTAG    972
                     |||||.|||||.|||.||||..||||||||||||.||||||||||
RBAM_016040__   1567 GAAGACTTTGCTAAATTGCTTCGAAGCTGGCTGGACGAGGATTAG   1611


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