Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02625 and RBAM_015890

See Amino acid alignment / Visit BSNT_02625 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_02625___rnhB.1.9828.seq
#    -bsequence dna-align/RBAM_015890___rnhB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02625___rnhB-RBAM_015890___rnhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02625___rnhB-RBAM_015890___rnhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02625___rnhB
# 2: RBAM_015890___rnhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     587/781 (75.2%)
# Similarity:   587/781 (75.2%)
# Gaps:          26/781 ( 3.3%)
# Score: 2138.0
# 
#
#=======================================

BSNT_02625___      1 GTGAATACATTAACCGTAAAGGACATTAAAGACCGTTTGCAGGAAGTGAA     50
                     ||||||||||||||||||||...|.|.|||||.||..||||.||.||.|.
RBAM_015890__      1 GTGAATACATTAACCGTAAAAAGCGTAAAAGAACGCCTGCAAGAGGTCAG     50

BSNT_02625___     51 GGATGCACAAGACCCATTTATTGCCCAATGCGAAAACGACCCGAGAAAAA    100
                     |||.|.|...|||||.||..||||||||||.||.||.|||||||||||||
RBAM_015890__     51 GGACGAAAGCGACCCCTTCCTTGCCCAATGTGAGAAAGACCCGAGAAAAA    100

BSNT_02625___    101 GCGTTCAAACGCTTGTAGAGCAATGGCTTAAAAAGCAAGCGAAAGAAAAA    150
                     ||||.||.||||||.|||||||||||||.||||||||.||.||.||||||
RBAM_015890__    101 GCGTACAGACGCTTTTAGAGCAATGGCTGAAAAAGCACGCAAAGGAAAAA    150

BSNT_02625___    151 GCGCTGAAAGAACAATGGGTGAATATGACTTCCTATGAAAGGCTGGCAAG    200
                     ||.||.|||||.||||||.||||.|||||..|.||.|||||.|||.||..
RBAM_015890__    151 GCTCTTAAAGAGCAATGGCTGAACATGACGGCATACGAAAGACTGTCATC    200

BSNT_02625___    201 AAACAAGGGATTTCGCTTGATTGCAGGTGTTGACGAGGTCGGCCGGGGGC    250
                     .||.|||||.||.|||.|||||||.|||||||||||.|.|||..|.||||
RBAM_015890__    201 CAAAAAGGGCTTCCGCCTGATTGCGGGTGTTGACGAAGCCGGAAGAGGGC    250

BSNT_02625___    251 CATTGGCAGGACCAGTTGTCGCCAGCGCAGTCATCCTTCCAGAGGAATGT    300
                     |..|.||.|||||.|||||||||.||||.|||||..|.||.|..|||||.
RBAM_015890__    251 CGCTTGCCGGACCGGTTGTCGCCGGCGCCGTCATTTTGCCGGCAGAATGC    300

BSNT_02625___    301 GAAATACTTGGGCTGACAGACTCCAAAAAGCTTTCAGAGAAAAAACGCGA    350
                     ||.||.||.||.||.||.|||||.||.||..|.||.||.||.||.|.|||
RBAM_015890__    301 GAGATTCTCGGTCTCACGGACTCGAAGAAATTGTCGGAAAAGAAGCTCGA    350

BSNT_02625___    351 GGAATATTACGAG-CTTATTATGAAGGAAGCACTGGCGGTCGGGATAGGA    399
                     |||.|||||| || |..||.|.|.|.|||||...|||.||.||..|.||.
RBAM_015890__    351 GGAGTATTAC-AGCCGGATCACGGAAGAAGCGGCGGCTGTAGGAGTCGGC    399

BSNT_02625___    400 ATTGTAGAAGC-TACTGTGATTGATGAGATCAATATATATGAAGCTTCAA    448
                     |||||..|.|| .|| ||.|||||...||||||.||.|||||.||..|.|
RBAM_015890__    400 ATTGTCCATGCGGAC-GTCATTGACCGGATCAACATTTATGAGGCCGCGA    448

BSNT_02625___    449 AAATGGCAATGGTGAAAGCGATACAA-GATTTGTCGGGTACACCTGATTA    497
                     .|.||||.|||||.|||||..| ||| |.|||..|||..|||||||||||
RBAM_015890__    449 GACTGGCGATGGTAAAAGCCGT-CAATGCTTTAACGGAAACACCTGATTA    497

BSNT_02625___    498 TTTGCTTGTTGACGCAATGACACTTCCCCTCGACACGGCTCAGGCGTCAA    547
                     |.||||||||||.||.|||||.|||||.||.||||...|.|||.|.|||.
RBAM_015890__    498 TCTGCTTGTTGATGCCATGACCCTTCCGCTTGACATTCCGCAGTCATCAG    547

BSNT_02625___    548 TTATAAAAGGCGATGCCAAAAGCGTGTCTATTGCGGCAGGTGCGTGTATC    597
                     ||||||||||.|||||||||||||||||.|||||.||.||.||.||.|||
RBAM_015890__    548 TTATAAAAGGGGATGCCAAAAGCGTGTCAATTGCCGCCGGAGCCTGCATC    597

BSNT_02625___    598 GCAAAAGTGACGAGGGACCGAATGATGAGCGCT---TATGCCGAAACGTA    644
                     ||||||||.|||.|||||||..|.|||   |||   ||.|||.||||.||
RBAM_015890__    598 GCAAAAGTAACGCGGGACCGTCTCATG---GCTGAGTACGCCAAAACCTA    644

BSNT_02625___    645 TCCCATGTACGGCTTTGAAAAAAATAAAGGCTATGGGACAAAAGAACATT    694
                     .||||||||||||||||||||||||||||||||.||.||.|||||||||.
RBAM_015890__    645 CCCCATGTACGGCTTTGAAAAAAATAAAGGCTACGGAACGAAAGAACATC    694

BSNT_02625___    695 TGGAAGCTCTCGCTGCATACGGCC---CAACTGAATTGCACCGCAAAACT    741
                     |.||||||||....||||||||.|   |||||  ||| |||||.|||||.
RBAM_015890__    695 TTGAAGCTCTTCAGGCATACGGACCGACAACT--ATT-CACCGAAAAACG    741

BSNT_02625___    742 TTCGCTCCTGTTCAATCTT----TCAGATAA    768
                     ||||||||.||||||||||    |.||    
RBAM_015890__    742 TTCGCTCCCGTTCAATCTTATTGTTAG----    768


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