Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02617 and RBAM_015840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_02617___ylqD.1.9828.seq
# -bsequence dna-align/RBAM_015840___ylqD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02617___ylqD-RBAM_015840___ylqD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02617___ylqD-RBAM_015840___ylqD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02617___ylqD
# 2: RBAM_015840___ylqD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 393
# Identity: 310/393 (78.9%)
# Similarity: 310/393 (78.9%)
# Gaps: 12/393 ( 3.1%)
# Score: 1231.5
#
#
#=======================================
BSNT_02617___ 1 ATGCAAATTATTCACCGTGTAGCCGTTATGCAAGTCTTAACCGAGCGCAG 50
|||||.|||||||||.|.|||.||||||||||.||..|.|||||||..||
RBAM_015840__ 1 ATGCAGATTATTCACAGGGTAACCGTTATGCAGGTTCTGACCGAGCAAAG 50
BSNT_02617___ 51 CAAAGAAAAGCTTTTAGCTTCTTTTGCCGAAAAGAAACAAATGCTTGAAC 100
|||.|||||||||||.||.||||||||.|||||.||.||.|.||||||||
RBAM_015840__ 51 CAAGGAAAAGCTTTTGGCCTCTTTTGCAGAAAAAAAGCAGACGCTTGAAC 100
BSNT_02617___ 101 GAGAATGCAGCCAGCTCTATTTTCAGCTTAGAAAACATGAGAAAGAACAG 150
||||||||||||||||||||||||||||||||||||||||.|||||.|||
RBAM_015840__ 101 GAGAATGCAGCCAGCTCTATTTTCAGCTTAGAAAACATGAAAAAGATCAG 150
BSNT_02617___ 151 CAAAATCCTGATATGATTGAACAATTTAAAAAGGCAATAGAAAAGCGAAA 200
||.|||||.|||.|....|||...||||||||.||.||.|||||..||.|
RBAM_015840__ 151 CAGAATCCCGATGTAGCGGAATCTTTTAAAAAAGCCATTGAAAAAAGACA 200
BSNT_02617___ 201 AGATGATATAAAAATCATCGATTTTCAAATTGCTCAAGTACATACA---- 246
|||..|.||.|||||.||||||||.||||| ||| .||.|||
RBAM_015840__ 201 AGACAAAATCAAAATGATCGATTTCCAAAT-----AAG-CCAGACAGAGT 244
BSNT_02617___ 247 --TTGCCGCTTGGCAGTGAGTTGAAAGAAAAGGAAGTCGATGCGCTGCTG 294
.|.||||||||.||.||..||||.||||||||..|||||||||||||.
RBAM_015840__ 245 CGCTCCCGCTTGGAAGCGAAGTGAAGGAAAAGGAGATCGATGCGCTGCTT 294
BSNT_02617___ 295 ACGATTGAAGCCGGGGATGACTGGCATGAGAAAACAGCAGCGAACACCAT 344
.|.||..|.|.|||.|||.||||||||||.||||||||.||.||.|||||
RBAM_015840__ 295 TCAATCAATGTCGGTGATAACTGGCATGAAAAAACAGCGGCAAATACCAT 344
BSNT_02617___ 345 CGTCATAAAAGACGGAAAAGTAATTGAAATTCGCCAGAGGTGA 387
|||||||||||||||...||||||||||||.||||.|||||||
RBAM_015840__ 345 CGTCATAAAAGACGGGGTAGTAATTGAAATCCGCCCGAGGTGA 387
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