Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02616 and RBAM_015830

See Amino acid alignment / Visit BSNT_02616 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:29
# Commandline: needle
#    -asequence dna-align/BSNT_02616___ylqC.1.9828.seq
#    -bsequence dna-align/RBAM_015830___ylqC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02616___ylqC-RBAM_015830___ylqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02616___ylqC-RBAM_015830___ylqC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02616___ylqC
# 2: RBAM_015830___ylqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 247
# Identity:     221/247 (89.5%)
# Similarity:   221/247 (89.5%)
# Gaps:           2/247 ( 0.8%)
# Score: 989.0
# 
#
#=======================================

BSNT_02616___      1 ATGACTGATCAACACTTGGAAGATTTGATTGTCCACATTGTGACGCCGCT     50
                     |||||||||||..||||||||||||||||||||..|||||||.|.|||||
RBAM_015830__      1 ATGACTGATCAGAACTTGGAAGATTTGATTGTCAGCATTGTGGCTCCGCT     50

BSNT_02616___     51 TGTTGATCATCCAGATGACAT-TCGCGTCATAAGAGAAGAAACCGATCAA     99
                     |||.||.|||||.||.||||| .|| ||||.||..|||||.||.||||||
RBAM_015830__     51 TGTCGACCATCCGGAAGACATAACG-GTCACAAAGGAAGAGACTGATCAA     99

BSNT_02616___    100 AAGATTGCGCTGCGCTTATCTGTCCATAAGTCAGATACCGGTAAAGTTAT    149
                     ||||||||||||||||||||||||.||||||||||||||||||||.||||
RBAM_015830__    100 AAGATTGCGCTGCGCTTATCTGTCAATAAGTCAGATACCGGTAAAATTAT    149

BSNT_02616___    150 CGGAAAGCAAGGCCGGACTGCAAAAGCGATTCGAACAGCTGTATTTGCAG    199
                     |||||||||||||||||||||||.||||||||||||.|..||.|||||||
RBAM_015830__    150 CGGAAAGCAAGGCCGGACTGCAAGAGCGATTCGAACCGTCGTTTTTGCAG    199

BSNT_02616___    200 CTGGCGCACAGTCTTCTAAGAAAGTTCAATTTGAAATATTTGACTAA    246
                     |||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_015830__    200 CTGGCGCACAGTCTTCTAAGAAAGTTCAATTTGAAATATTTGACTGA    246


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.