Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02598 and RBAM_015670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_02598___yloV.1.9828.seq
# -bsequence dna-align/RBAM_015670___yloV.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02598___yloV-RBAM_015670___yloV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02598___yloV-RBAM_015670___yloV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02598___yloV
# 2: RBAM_015670___yloV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1697
# Identity: 1262/1697 (74.4%)
# Similarity: 1262/1697 (74.4%)
# Gaps: 64/1697 ( 3.8%)
# Score: 4613.5
#
#
#=======================================
BSNT_02598___ 1 TTGTCTATCAGAACATTAAACGGCAGAACCTTTGCCGAGATGATTCTTGC 50
|||||||...|||..|||.|.||.|||.|.|||||.|..||||||||.||
RBAM_015670__ 1 TTGTCTAGACGAAACTTAGATGGGAGAGCTTTTGCGGCAATGATTCTGGC 50
BSNT_02598___ 51 GGGAGCGCAGA-ATCTGTCTCAAAACGCCAGTGCAGTTGATGCACTGAAC 99
|||.||..||| || |||||||||||||....||.||.|||||.||||||
RBAM_015670__ 51 GGGGGCTGAGACAT-TGTCTCAAAACGCATCCGCGGTGGATGCGCTGAAC 99
BSNT_02598___ 100 GTGTTTCCGGTGCCGGACGGTGATACGGGAACAAATATGAACCTGTCGAT 149
||||||||.|||||.|||||.|||||.||||||||||||||..|.|||||
RBAM_015670__ 100 GTGTTTCCCGTGCCTGACGGCGATACCGGAACAAATATGAATTTATCGAT 149
BSNT_02598___ 150 GACTTCCGGAGCAAGAGAAGTTGAACAAATGGATACGGATGATATCGGGA 199
|.|.|||||.||||||||.||.||.||.||.||..|....||.|||||.|
RBAM_015670__ 150 GTCATCCGGTGCAAGAGAGGTAGAGCACATTGACTCACCCGACATCGGCA 199
BSNT_02598___ 200 AGGTGGGTTCCGCGTTATCTAAAGGGCTGCTCATGGGAGCACGCGGAAAT 249
|.||.||...|||..|.||.|||||.|||||.|||||.||..|.|||||.
RBAM_015670__ 200 AAGTCGGCATCGCCCTGTCAAAAGGCCTGCTTATGGGGGCGAGAGGAAAC 249
BSNT_02598___ 250 TCAGGAGTTATCCTATCCCAATTGTTCCGCGGATTTAGCAAA-AGCATTG 298
|||||.||.|||.|.||||||||||||.|.|| |||..|||| |||||||
RBAM_015670__ 250 TCAGGGGTGATCTTGTCCCAATTGTTCAGAGG-TTTCACAAAGAGCATTG 298
BSNT_02598___ 299 AAACGAAAAAAGAAATTAATGCACTTGAGTTTGCCGCTGCGCTGCAAGCA 348
|||..|||||..||||..|.||.|..||.||||||||.||.||.|||||.
RBAM_015670__ 299 AAAACAAAAACCAAATAGACGCCCAAGAATTTGCCGCAGCACTCCAAGCG 348
BSNT_02598___ 349 GGTGTAGACATGGCGTATAAAGCTGTCATGAAACCTGTAGAGGGCACCAT 398
||.||.||.|||||.|||||.||.|||||||||||.||.||.||.||.||
RBAM_015670__ 349 GGAGTGGATATGGCATATAAGGCGGTCATGAAACCGGTTGAAGGAACGAT 398
BSNT_02598___ 399 TTTAACAGTTGCAAAAGACGCTGCAAAAAAAGCGATGATCTTAGCAGAAA 448
||||||.||.||.||.||.||.||.|||||||||.|...||..||..||.
RBAM_015670__ 399 TTTAACCGTGGCCAAGGATGCGGCTAAAAAAGCGGTCGCCTCGGCCAAAG 448
BSNT_02598___ 449 AAGAAACCGATATCACTGCGCTGATGATTGCAGTGACAGAAGAAGCAGAG 498
|||||||||||||.|.|.||.|.|||...||.||.|..||||||||.||.
RBAM_015670__ 449 AAGAAACCGATATTATTTCGGTCATGGAGGCCGTTATTGAAGAAGCGGAA 498
BSNT_02598___ 499 GCGTCTTTAAACCGCACCCCTGAATTGCTACCTGTCCTAAAGGAAGTAGG 548
|||||..|.||||||||.||.||..||||.|||||..|||||||.||.||
RBAM_015670__ 499 GCGTCGCTGAACCGCACGCCGGATCTGCTTCCTGTTTTAAAGGACGTCGG 548
BSNT_02598___ 549 AGTTGTCGATAGCGGGGGCAAAGGCCTGCTCTGTGTGTATGAAGGTTTCC 598
.||.||.||.|||||.||.|||||.|||||.|||||.||||||||.||..
RBAM_015670__ 549 TGTCGTTGACAGCGGCGGAAAAGGTCTGCTTTGTGTATATGAAGGCTTTT 598
BSNT_02598___ 599 TTGCTTCATTAAAAGGTGAAACTGTACCTCAGAAAGCAGTTCTTCCGTCA 648
|.|||.|.||||||||.||..|||||||..|.|||||.|||||||||.||
RBAM_015670__ 599 TGGCTGCTTTAAAAGGAGAGGCTGTACCGAAAAAAGCGGTTCTTCCGGCA 648
BSNT_02598___ 649 CTTGACGACATGGTCAGCGCAGAGCATCACAAGAGCGCGCAAAGCATGAT 698
||.||.||.|||||.|..||.||||||||.||.||||||||.||||||.|
RBAM_015670__ 649 CTCGATGATATGGTGAATGCCGAGCATCATAAAAGCGCGCAGAGCATGCT 698
BSNT_02598___ 699 GAATACCGAAGATATTGAATTTGGATTCTGTACCGAAGTGATGGTTAGGC 748
||.|||.|||||.||||||||.|||||.|||||.|||||||||||.||||
RBAM_015670__ 699 GAGTACAGAAGACATTGAATTCGGATTTTGTACGGAAGTGATGGTGAGGC 748
BSNT_02598___ 749 TTGATC-AGACAAAAAGAGAGTTCGACGAAGGCACGTTCAGGCAAGACCT 797
|.|||| |||.|||..|| .||||.|.||||..||||||||..|.||.||
RBAM_015670__ 749 TGGATCAAGATAAACGGA-CGTTCAAGGAAGAGACGTTCAGAAACGAACT 797
BSNT_02598___ 798 CAGCCAGTTCGGAGATTCTCTGCTTGTGATTGCGGATGAATCGCTGGCGA 847
.||||..|||||.|||||..||||.||..|.||.|||||..|||||||||
RBAM_015670__ 798 GAGCCGTTTCGGCGATTCATTGCTGGTCGTGGCTGATGATACGCTGGCGA 847
BSNT_02598___ 848 AGGTTCATATTCATGCTGAAGAGCCGGGAAACGT-GTTAAACTACGCCCA 896
|.||||||||||||||.|||||.||.||.||||| .|.||.|| |||.||
RBAM_015670__ 848 AAGTTCATATTCATGCCGAAGAACCAGGGAACGTACTCAATCT-CGCACA 896
BSNT_02598___ 897 GCATTACGGTGAATTGATCAAAATAAAAATAGAAAATATGAGAGAACAGC 946
||.||||||.||.|||||.|||||.|||||.|||||.|||||.|||||||
RBAM_015670__ 897 GCGTTACGGCGATTTGATTAAAATTAAAATTGAAAACATGAGGGAACAGC 946
BSNT_02598___ 947 ATACCTCTATCATCAGTCAA---------GAAAGCAAACCTGCAGAC--- 984
||||.||.||||||||.||| ||||..||.|||||.|.|
RBAM_015670__ 947 ATACTTCAATCATCAGCCAAGAACATGATGAAAAAAAGCCTGCCGGCGTT 996
BSNT_02598___ 985 ---AACGAAATACCGCCGGCAAAGCAGCCGTATGGCATTGTGACTGTGGC 1031
||.||| |||.||| ||||.|.||||||.|||||||||||
RBAM_015670__ 997 ATGAAAGAA-----GCCCGCA----AGCCTTTTGGCATCGTGACTGTGGC 1037
BSNT_02598___ 1032 GATGGGAGAAGGAATTTCAGACCTATTCAAAAGCATTGGCGCTTCTGTTG 1081
.||||||||.||.|||||.||..|.||.|..|||||.||||||||....|
RBAM_015670__ 1038 AATGGGAGAGGGCATTTCTGAATTGTTTACGAGCATCGGCGCTTCACACG 1087
BSNT_02598___ 1082 TGATTGAAGGCGGCCAGACCATGAACCCAAGCACTGAGGATATTGTTGAT 1131
|.||.||||||||||||||.|||||.||.|||||.||.|||||||||||.
RBAM_015670__ 1088 TAATCGAAGGCGGCCAGACAATGAATCCGAGCACGGAAGATATTGTTGAA 1137
BSNT_02598___ 1132 GCCGTGAAGTCTGTAAATGCAGATACGGTATTTATCCTGCCTAACAACTC 1181
|||.|..|||||||.|||||.||.|||||.||.||.||.||.|||||.||
RBAM_015670__ 1138 GCCATTCAGTCTGTCAATGCGGAGACGGTTTTCATTCTTCCGAACAATTC 1187
BSNT_02598___ 1182 CAACATTATCATGGCTGCTAACCAAGCGGCCAGCGTAGTGGATGAACAGG 1231
|||.|||.|.||||||||.||.||.|||||.|||||.|..||.|||.|.|
RBAM_015670__ 1188 CAATATTGTGATGGCTGCCAATCAGGCGGCGAGCGTGGCTGAAGAAAATG 1237
BSNT_02598___ 1232 TTTTTGTCATTCCTGCTAAAACGGTTCCGCAAGGGATGTCAGCCCTGCTG 1281
|..||||||||||.||.||||||||.||.|||||.|||.|.||||||||.
RBAM_015670__ 1238 TCATTGTCATTCCGGCAAAAACGGTCCCTCAAGGCATGACTGCCCTGCTT 1287
BSNT_02598___ 1282 GCTTTTAACCCGGATCAAGAAGCTGAAGCGAACGAGGCCAATATGC-TAA 1330
||.||||||||.||.||....|||||.|..||.||.||.||||||| |.|
RBAM_015670__ 1288 GCGTTTAACCCTGACCAGCCGGCTGATGTAAATGAAGCTAATATGCTTGA 1337
BSNT_02598___ 1331 GCGCCATTCAGCAAGTAAAAAGCGGACAGGTGACGTTCTCAGTCAGAGAT 1380
| |||||.|.|.|.||.|||||||||||||||||.|..|||||||||||.
RBAM_015670__ 1338 G-GCCATCCGGAATGTGAAAAGCGGACAGGTGACATATTCAGTCAGAGAC 1386
BSNT_02598___ 1381 ACTCATATTGACGGTAAAGATATTAAAAAAGGCGACTTTATGGGCATTCT 1430
||.|||||.|||||.|||||||||||||||||.||.|||||.||||||.|
RBAM_015670__ 1387 ACCCATATCGACGGCAAAGATATTAAAAAAGGTGATTTTATCGGCATTTT 1436
BSNT_02598___ 1431 GAATGGAACGATTATCGGCACTTCTGAAAATCAGCT--GTCAGCCGCGAA 1478
.||..|..|.||||||||||...|.|||.|||.|.| || ||.|||||
RBAM_015670__ 1437 AAACAGTTCAATTATCGGCAGCGCCGAAGATCGGATAAGT--GCGGCGAA 1484
BSNT_02598___ 1479 AATGCTGCTGTCAGAAATGATCGGAGAAGATGATGAAATCGTGACCATTC 1528
|.||||||||...|||||||||||.||.||.|||||||||||.|||||.|
RBAM_015670__ 1485 ATTGCTGCTGGATGAAATGATCGGGGATGAAGATGAAATCGTCACCATCC 1534
BSNT_02598___ 1529 TATATGGTGAGGATGCGTCTCAGGAAGAAGCTGAGCAGCTTG-------- 1570
|.||.||.|||||.|||.|..|.||||||||||||.|.||.|
RBAM_015670__ 1535 TGTACGGAGAGGACGCGCCGGAAGAAGAAGCTGAGAAACTCGCTGAGTAT 1584
BSNT_02598___ 1571 -----AAGCGTTTCTCAGTGAAAAGTACGAGGAGATTGAGGTTGAGATCC 1615
||||| ||.||||| ||.||.||||||||.||||
RBAM_015670__ 1585 ATTGCAAGCG----TCTGTGAA---------GATATCGAGGTTGAAATCC 1621
BSNT_02598___ 1616 ACAATGGGAAACAGCCTCTGTATTCGTATATAGTTTCAGCAGAATAG 1662
|.||.||.|.|||||||||||||.|.||||||.||.|.|||||||||
RBAM_015670__ 1622 ATAACGGCAGACAGCCTCTGTATCCATATATATTTGCGGCAGAATAG 1668
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