Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02589 and RBAM_015590

See Amino acid alignment / Visit BSNT_02589 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence dna-align/BSNT_02589___prpC.1.9828.seq
#    -bsequence dna-align/RBAM_015590___prpC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02589___prpC-RBAM_015590___prpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02589___prpC-RBAM_015590___prpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02589___prpC
# 2: RBAM_015590___prpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity:     568/805 (70.6%)
# Similarity:   568/805 (70.6%)
# Gaps:          74/805 ( 9.2%)
# Score: 1965.5
# 
#
#=======================================

BSNT_02589___      1 ---------TTGTTAACAGCCTTAAAAACAGATACAGGAAAAATCCGCCA     41
                              |||.|.||||||||.||||||||||||||.|||.||||||.
RBAM_015590__      1 GTGAAGAGGTTGATTACAGCCTTGAAAACAGATACAGGTAAAGTCCGCCG     50

BSNT_02589___     42 GCATAATGAAGATGATGCGGGGATATTCA-AGGGGAAAGATGA-------     83
                     ||||||||||||||..|||||.||.|||| |    |||||.||       
RBAM_015590__     51 GCATAATGAAGATGCGGCGGGCATTTTCACA----AAAGAAGACGCGGTG     96

BSNT_02589___     84 ATTTATATTAGCGGTTGTCGCTGATGGCATGGGCGGCCATCTTGCTGGAG    133
                     .||       |||||||||||.||.|||||||||||.||||||||.||||
RBAM_015590__     97 CTT-------GCGGTTGTCGCCGACGGCATGGGCGGTCATCTTGCCGGAG    139

BSNT_02589___    134 ATGTTGCGAGCAAGATGGCTGTGAAAGCCATGGGGGAGAAATGGAA--TG    181
                     ||||.|||||||.||||||.||....||.||||..|||.|.|||||  .|
RBAM_015590__    140 ATGTAGCGAGCAGGATGGCGGTTGCGGCGATGGAAGAGCAGTGGAACCGG    189

BSNT_02589___    182 AAGCAGAGACGATTCCAACTGCGCCCTCGGAATGTGAAAAATGGCTCATT    231
                     |  |.||.|||.||||..||..|||.||.|..||.||..|.|||||.|..
RBAM_015590__    190 A--CCGAAACGGTTCCTTCTCTGCCGTCTGCTTGCGAGGATTGGCTGAAA    237

BSNT_02589___    232 GAACAGATTCTTTCGGTAAACAGCAAAATATACGATCATGCTCAAGCCCA    281
                     ||.|.|||||.|..||..||...||||.||.|.||.||.|||.||||..|
RBAM_015590__    238 GACCGGATTCATGAGGCGAATGTCAAAGTACATGACCACGCTAAAGCGAA    287

BSNT_02589___    282 CGAAGAATGCCAAGGCATGGGGACGACGATTGTATGTGCACTT-TTTACG    330
                     .||||||||||..||.|||||.||.||..||||.||.|| ||| ||.||.
RBAM_015590__    288 TGAAGAATGCCGGGGTATGGGCACCACTGTTGTTTGCGC-CTTATTCACC    336

BSNT_02589___    331 GGGAAAACGGTTT----CTGTTGCCCATATCGGAGACAGCAGATGCTATT    376
                     |||||    ||||    ||||.||.||||||||.||||||.|.|||||..
RBAM_015590__    337 GGGAA----GTTTGTCACTGTGGCTCATATCGGTGACAGCCGGTGCTACC    382

BSNT_02589___    377 TGCTTCAGGACGATGATTTCGTTCAAGTGACAGAAGACCATTCGCTTGTA    426
                     |||||||.||.|..||.|||..|||..||||.|||||||||||||||||.
RBAM_015590__    383 TGCTTCAAGAGGGGGAATTCACTCAGCTGACTGAAGACCATTCGCTTGTG    432

BSNT_02589___    427 AATGAACTGGTTCGCACTGGAGAGATCTCCAGAGAAGACGCTGAACATCA    476
                     |||||.|||||....||.|||||.||.||.|.|||.|||||.||.||.||
RBAM_015590__    433 AATGAGCTGGTCAAGACAGGAGAAATTTCGAAAGAGGACGCCGAGCACCA    482

BSNT_02589___    477 TCCGCGAAAAAATGTGTTGACGAAGGCGCTTGGAACAG-----ACCAGTC    521
                     ||||||.||||||||.|||||||..|||||.||.||||     ||||   
RBAM_015590__    483 TCCGCGGAAAAATGTATTGACGAGAGCGCTGGGGACAGATGAAACCA---    529

BSNT_02589___    522 AGTCAGTATTGACACCCGTTCCTTTGA----TATAGAACCCGGAGACAAA    567
                       |||||...|||.|||||||.|||||    |.| ||   |||.||..|.
RBAM_015590__    530 --TCAGTCCCGACGCCCGTTCTTTTGAACTGTCT-GA---CGGCGATCAG    573

BSNT_02589___    568 CTGCTTCTATGTTCTGACGGACTGACGAATAAAGTGGAAG-GCACTGAGT    616
                     ||||||.||||.||||||||||||.|.||||||.|.|||| .||| |||.
RBAM_015590__    574 CTGCTTTTATGCTCTGACGGACTGTCAAATAAAATAGAAGATCAC-GAGA    622

BSNT_02589___    617 TAAAAGACATCCTGCAAAGCGATTCAGCTCCTCAGGAAAAAGTAAACCTG    666
                     |.|||.|.||.||.|||..|||.|..|.||||||||||||||||.||||.
RBAM_015590__    623 TCAAACAAATGCTTCAAGCCGAATTTGATCCTCAGGAAAAAGTAGACCTT    672

BSNT_02589___    667 CTTGTGGACAAAGCCAATCAGAACGGCGGAGAAGACAACATCACAGCAGT    716
                     ||..|...||||||.|||||.||||||||.|||||.||||||||.||.||
RBAM_015590__    673 CTCATCAGCAAAGCGAATCAAAACGGCGGCGAAGATAACATCACGGCTGT    722

BSNT_02589___    717 TTTGCTTGAGCTT---GCTTTACAAGTTG---AAGAGGGTGAAGATCAGT    760
                     .|||.|||||.||   ||      ||.||   |||||||||||||..|||
RBAM_015590__    723 GTTGATTGAGTTTTCCGC------AGATGCAAAAGAGGGTGAAGACAAGT    766

BSNT_02589___    761 GCTAA    765
                     |||||
RBAM_015590__    767 GCTAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02589 and RBAM_015590

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
