Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02587 and RBAM_015570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_02587___yloM.1.9828.seq
# -bsequence dna-align/RBAM_015570___rsmB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02587___yloM-RBAM_015570___rsmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02587___yloM-RBAM_015570___rsmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02587___yloM
# 2: RBAM_015570___rsmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1376
# Identity: 1073/1376 (78.0%)
# Similarity: 1073/1376 (78.0%)
# Gaps: 64/1376 ( 4.7%)
# Score: 4196.5
#
#
#=======================================
BSNT_02587___ 1 ATGAAAAAAACTAGTGTTCGTGACATCGCCCTTGAGGCGC-TGATCAAAT 49
|||||.||||.||.|||.||.||..||||||||||.|||| ||| .||..
RBAM_015570__ 1 ATGAAGAAAATTAATGTCCGGGAGCTCGCCCTTGAAGCGCTTGA-GAAGC 49
BSNT_02587___ 50 TAGAACAAAACCAGGCATACAGCAACCTGCTGCTGAAATCGGTCATTAAA 99
|.||.|||||.||||||||||||||||||||.||.|.||||||.||.|
RBAM_015570__ 50 TTGAGCAAAATCAGGCATACAGCAACCTGCTTCTTACATCGGTTATCA-- 97
BSNT_02587___ 100 TCAAATGAA----CTGAGTGATCAGGACAGAGGGCTTTTGACTGAACTTG 145
|||.||| ||.||.||||||||||||||.||..||||.||.||||
RBAM_015570__ 98 --AAACGAACACGCTCAGCGATCAGGACAGAGGACTGCTGACAGAGCTTG 145
BSNT_02587___ 146 TCTATGGTACATTACAAAATAAGATCGCGCTT-GATTATATGCTTAAACC 194
||||.||.||..|.||||||||.||||| ||| ||.||.|||||.||.||
RBAM_015570__ 146 TCTACGGAACGCTGCAAAATAAAATCGC-CTTAGACTACATGCTGAAGCC 194
BSNT_02587___ 195 GTTTATCAATAAGCCTCAAAAGGTAAAGCCGTGGGTGATTCAGCTTCTTC 244
.||||||...|||||..|.||.||.|||.|.||||||||||||||.||||
RBAM_015570__ 195 TTTTATCCGCAAGCCGAATAAAGTGAAGTCATGGGTGATTCAGCTGCTTC 244
BSNT_02587___ 245 GCCTATCCTTATATCAAATGGAGTATTTAGAGAAGATTCCAGACAGGGCA 294
|.||.|||...||||||||||||||||||||.||.||.||.||..|.||.
RBAM_015570__ 245 GTCTGTCCGCGTATCAAATGGAGTATTTAGAAAAAATACCGGATCGCGCC 294
BSNT_02587___ 295 GCCATTCATGAAGCGGTTGAGATTGCTAAAATCCGCGGACACAAAGGCAT 344
|||||||||||||||||||||||.||.||||..|||||.||.||.|||||
RBAM_015570__ 295 GCCATTCATGAAGCGGTTGAGATCGCCAAAAAACGCGGGCATAAGGGCAT 344
BSNT_02587___ 345 TGCTTCATTTGTCAACGGCGTGCTCCGTTCTATTCAGCGCGAAGGTGTTC 394
|||.||.||||||||||||.|.|||||.||..|.|||||.||||||||.|
RBAM_015570__ 345 TGCGTCCTTTGTCAACGGCATCCTCCGCTCCCTGCAGCGTGAAGGTGTGC 394
BSNT_02587___ 395 CATCCTTTGACGCGATCGAAGATCCTGTACGCCGGCTGGCGACAGAAACA 444
|.||.||.|..|..||.|||||.||.||.|.|||.||..|.|||||.|||
RBAM_015570__ 395 CGTCATTCGCTGAAATTGAAGACCCGGTTCTCCGTCTTTCCACAGAGACA 444
BSNT_02587___ 445 AGCCATCCGGAGTGGCTTGTGAAAGAGTGGGCGGATGCGTATGGATTTGA 494
||||||||.||||||||.||.||||||||||..||.|||||.||.|||||
RBAM_015570__ 445 AGCCATCCCGAGTGGCTCGTAAAAGAGTGGGTCGAGGCGTACGGCTTTGA 494
BSNT_02587___ 495 AGCTGCGGAAAAGATTTGCCGCATCCATCTCATTCCGCCGAAGCAGACGC 544
.||.||.||||||||.|||||.||.|||||||||||||||||||||||||
RBAM_015570__ 495 GGCAGCTGAAAAGATCTGCCGGATTCATCTCATTCCGCCGAAGCAGACGC 544
BSNT_02587___ 545 TGCGTGTCAATCAAATGAA-AGCAGACAGAGCTGAGCTGCTTGACCAAAT 593
|.|||||||||||.||.|| ||| |||||.| |||.
RBAM_015570__ 545 TCCGTGTCAATCACATAAAGAGC-GACAGGG---------------AAAC 578
BSNT_02587___ 594 GGCTGCTGA--------GGGAA--------TCGAAGTTGAAAAAGGCGAC 627
|| |||||| |.||| |.||||.||||...||.|||
RBAM_015570__ 579 GG-TGCTGAATGAGATGGAGAATGCCGGTCTTGAAGCTGAAGCCGGAGAC 627
BSNT_02587___ 628 CTCGCTGAAGATGCTGTGAAGCTCTTAAAGGGAACAATTGCCGGAAC--- 674
||..||...|||||..|.|||||.|||||.||||..||.|| ||||
RBAM_015570__ 628 CTTTCTCCTGATGCGATTAAGCTTTTAAAAGGAAGCATCGC--GAACACG 675
BSNT_02587___ 675 TCATTTCTTCCAAAACGGCGAAGTTTCCATCCAGGATGAGAGCTCCATGC 724
.||||| ||||||||||||...||.|||||.||||||||.|||||.||||
RBAM_015570__ 676 GCATTT-TTCCAAAACGGCCGGGTATCCATACAGGATGAAAGCTCAATGC 724
BSNT_02587___ 725 TCGTCGCCCGCGCCCTTGACCCTAAGCCTGATGAAACAGTGCTTGACGCG 774
|.|||||.||.||.||.|||||.|||||.|..|||||.||..|.|||||.
RBAM_015570__ 725 TTGTCGCGCGGGCGCTGGACCCGAAGCCGGGCGAAACCGTTTTAGACGCA 774
BSNT_02587___ 775 TGTGCGGCGCCTGGCGGAAAGTCGGCTCATATCGCAGAATTAATGCAGAA 824
||.||.||.||.|||||||||||||||||.||.||.|||.|.|||.||||
RBAM_015570__ 775 TGCGCCGCACCGGGCGGAAAGTCGGCTCACATTGCGGAACTGATGGAGAA 824
BSNT_02587___ 825 CAAGGGGAGCGTTACGTCGCTTGATCTTCACAAACATAAAGTGAAGCTGA 874
|.||||||||.|.||.|||||||||||||||...||||||||||||||||
RBAM_015570__ 825 CGAGGGGAGCCTCACATCGCTTGATCTTCACCGCCATAAAGTGAAGCTGA 874
BSNT_02587___ 875 TCAAAGAAGCGGCAGACCGGCTTGGCCTGACAATCATTCATGCGGAAACA 924
|.|||||.|..|||||.|||||.||.||.||.|||||..|.|||.||||.
RBAM_015570__ 875 TTAAAGAGGGCGCAGAACGGCTCGGGCTTACGATCATCGACGCGCAAACG 924
BSNT_02587___ 925 ATGGATGCTAGAAAAGCGGGGGAAACGTTTG----AAAACGAACAGTTTG 970
||||||||..||||||||||.||..|.|||| | ||||.|||||
RBAM_015570__ 925 ATGGATGCGCGAAAAGCGGGAGAGGCCTTTGGCGCA----GAACGGTTTG 970
BSNT_02587___ 971 ACCGAATATTGGTCGATGCCCCGTGCTCAGGTTTCGGTGTTATCAGAAGA 1020
||||..|..|.||.||||||||.||||||||||||||.||.|||||||||
RBAM_015570__ 971 ACCGTGTTCTCGTTGATGCCCCTTGCTCAGGTTTCGGCGTCATCAGAAGA 1020
BSNT_02587___ 1021 AAGCCGGACATGAAATACACGAAAAAGCCTGACGACAGCGCCCGTCTAGC 1070
||.||.||.||||||||.|||||.|.|||.||.||||||...||.||..|
RBAM_015570__ 1021 AAACCCGATATGAAATATACGAAGACGCCGGAGGACAGCAGACGGCTGTC 1070
BSNT_02587___ 1071 TGAAATCCAGCTGTCG--ATCCTGAGGGAAATCGCACCATTAGTAAAAAA 1118
.|||||||||| ||| ||..|.|||||||||||.||||||||||||||
RBAM_015570__ 1071 AGAAATCCAGC--TCGGCATTTTAAGGGAAATCGCCCCATTAGTAAAAAA 1118
BSNT_02587___ 1119 AGGTGGCACTCTTGTCTACAGTACGTGTACAATGGACCGGACAGAAAATG 1168
|||||||||.||.||.||||||||||||||||||||||||||||||||||
RBAM_015570__ 1119 AGGTGGCACACTCGTATACAGTACGTGTACAATGGACCGGACAGAAAATG 1168
BSNT_02587___ 1169 ATGAAGTAATACATGCGTTTATACAAGAACATCCTGATTTTGAACCCGAT 1218
|.|||||.||.||||||||||||||||||||.|||||.||||||||||||
RBAM_015570__ 1169 AAGAAGTTATGCATGCGTTTATACAAGAACACCCTGAGTTTGAACCCGAT 1218
BSNT_02587___ 1219 TTGTCTCTTGAAAAGCGGCTGCCTGAAAAGGTGAGACCCTTTGTTCGGGA 1268
|||||||||||||||||||||||||||||||.||||||||||||||.|||
RBAM_015570__ 1219 TTGTCTCTTGAAAAGCGGCTGCCTGAAAAGGCGAGACCCTTTGTTCAGGA 1268
BSNT_02587___ 1269 TGGAAGGCTTCAGATCCTTCCTCATTATTTCGGAACAGATGGTTTCTTTA 1318
||||||.|||||.||.|||||.|||||||||||||||||.||||||||||
RBAM_015570__ 1269 TGGAAGCCTTCAAATTCTTCCGCATTATTTCGGAACAGACGGTTTCTTTA 1318
BSNT_02587___ 1319 TTTGCAGCATGAGAAAGAAGGGATAA 1344
||.|||||||||||||||||||||||
RBAM_015570__ 1319 TTAGCAGCATGAGAAAGAAGGGATAA 1344
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