Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02584 and RBAM_015540
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_02584___priA.1.9828.seq
# -bsequence dna-align/RBAM_015540___priA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02584___priA-RBAM_015540___priA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02584___priA-RBAM_015540___priA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02584___priA
# 2: RBAM_015540___priA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2465
# Identity: 1894/2465 (76.8%)
# Similarity: 1894/2465 (76.8%)
# Gaps: 100/2465 ( 4.1%)
# Score: 7241.5
#
#
#=======================================
BSNT_02584___ 1 ATGAATTTTGCCGAAGTCATCGTTGATGTGAGCACCAAAAATATAGACAG 50
||||||.|.||.||||||||.||.|||||.|||.|||||||.||.|||||
RBAM_015540__ 1 ATGAATGTAGCAGAAGTCATTGTCGATGTCAGCTCCAAAAACATTGACAG 50
BSNT_02584___ 51 GCCTTTTGATTATAAAATCCCAGACCATCTCAAGGGCATGATCAAAACGG 100
.||.||||||||.|||||.||.||.|||.|.||.||.||||||.||...|
RBAM_015540__ 51 ACCCTTTGATTACAAAATTCCCGATCATTTAAAAGGGATGATCGAAGTCG 100
BSNT_02584___ 101 GGATGCGGGTCATTGTTCCGTTTGGCCCCCGTAAGATTCAAGGATTTGTG 150
|.||||||||.|||||.|||||||||||.||.|||.||||||||||||||
RBAM_015540__ 101 GCATGCGGGTGATTGTCCCGTTTGGCCCGCGCAAGCTTCAAGGATTTGTG 150
BSNT_02584___ 151 ACAGCAGTCAAAGAAGCATCTGACCTA----TCGGGAAAATCTGTCAAGG 196
||.|...|.||||||.|.|||||..|| .||| .||..|.||||
RBAM_015540__ 151 ACCGGTTTGAAAGAATCGTCTGAATTAAACGGCGG----CTCAATGAAGG 196
BSNT_02584___ 197 AAGTAGAG-GGTTTATTAGATCTTACACCTGTTCTGACAGAGGAGCTTAT 245
||||.||| .|.||.|| |||.|.||.||.||||||||.|||||.||.||
RBAM_015540__ 197 AAGTCGAGAAGCTTCTT-GATTTGACGCCCGTTCTGACTGAGGAACTGAT 245
BSNT_02584___ 246 GGATCTGTCATCATGGCTGTCAGACAAAACGCTGTCTTTTAAAATAACGG 295
|.|.|||||.||||||||.||.||||||||||||||.||||||||.||||
RBAM_015540__ 246 GCAGCTGTCTTCATGGCTTTCTGACAAAACGCTGTCGTTTAAAATCACGG 295
BSNT_02584___ 296 CGCTTCAAGCAATGCTGCCTGCCGCCTTAAAGGCGAAATATGAAAAAGAA 345
|||||||.|||||||||||.|||||..|.||||||||.||.||.|||||.
RBAM_015540__ 296 CGCTTCAGGCAATGCTGCCCGCCGCACTGAAGGCGAAGTACGAGAAAGAG 345
BSNT_02584___ 346 TTAAAAATTGCACACG-----GCGCCGATCTTCCGCCGCAAGTGGAACGG 390
.|.|||.|.|...||| ||||.|| |.|||.|..|..|||.|
RBAM_015540__ 346 CTGAAAGTCGTTGACGAAGAAGCGCTGA-----CACCGGACATCAAACAG 390
BSNT_02584___ 391 CTGTTTACTGAAACAAAGACG-CTGTTGTATTCGGATATACCCGATCATG 439
|| |||...|||.||||.|.| ||..||||.||||||||..||||
RBAM_015540__ 391 CT-TTTCAGGAATCAAAAAAGTCTTCTGTACTCGGATATTACCGA----- 434
BSNT_02584___ 440 ATACGCTGAAA-----CTGATTCAAAGGCATGTTCAA------------A 472
||||| || ||| |.|| .||||| |
RBAM_015540__ 435 ------TGAAAGCATTCT--TTC---GTCA-CTTCAAAAATTCGTGCGCA 472
BSNT_02584___ 473 AAGGGGACATTGACGTGACGTATAAAGTCGCGCAAAAAACCAATAAAAAA 522
||||...||||||.||.||.|||||||||||.||||||||.|||||||||
RBAM_015540__ 473 AAGGAAGCATTGATGTCACATATAAAGTCGCCCAAAAAACGAATAAAAAA 522
BSNT_02584___ 523 ATGGTCAGGCAT-ATTCAGGCAAATGCGAGTAAAGAAGAGCTTGCTAAGC 571
|||.|| .|||| ||..|.||....|||...||||||||.||.||...||
RBAM_015540__ 523 ATGATC-CGCATGATCGAAGCGGGGGCGGACAAAGAAGAACTCGCCCGGC 571
BSNT_02584___ 572 AGGCTGAGGGATTGTCCCGCCAAGCAG----CAAAACAGCAGGCGATTCT 617
|.||.||.|.|||| .|.|||||| |.|||||||...|..|.||
RBAM_015540__ 572 ACGCAGATGCATTG----ACAAAGCAGGCTTCTAAACAGCTCACCGTGCT 617
BSNT_02584___ 618 TCACTT-TCTCATCTCTGAGCCGGAAGGTGTGAAAATTCCTGCTGCGGAA 666
| |||| |.|.||| |.||| .||.|..||.|||.|.||.||.||.
RBAM_015540__ 618 T-ACTTATTTTATC-----GGCGG-GGGAGCAAAGATTTCCGCGGCCGAG 660
BSNT_02584___ 667 TTGTGCAAAAAAACGGACACGAGCTCTGCAACCATCAAAACCCTTATCCA 716
.|.||||||||.||.||..|.||.||.||.||..|.|||||.|||.|..|
RBAM_015540__ 661 CTTTGCAAAAAGACCGATTCCAGTTCCGCGACGCTGAAAACGCTTCTTAA 710
BSNT_02584___ 717 AAAAGGGCTTTTGAAGGAAAGCTATGAAGAGGTTTACAGAGATCCCTATC 766
|||.||||||.|.|.||||||||.|||.|||||||||.|.|||||.||||
RBAM_015540__ 711 AAAGGGGCTTCTTACGGAAAGCTTTGAGGAGGTTTACCGCGATCCTTATC 760
BSNT_02584___ 767 AGGACAAAATGTTCAAAAAAACAGAGCCCCTGCCGCTGACAGACGAACAG 816
||||||.|||||||||||||||||||||.||..|.||.|||||.||.|||
RBAM_015540__ 761 AGGACAGAATGTTCAAAAAAACAGAGCCGCTCTCTCTTACAGAAGAGCAG 810
BSNT_02584___ 817 AGGGCTGCCTTCGAGCCCATACGCGAGACATTGGACAGC----------G 856
..|||.||.||.|||||.|| .|.||| ||| .
RBAM_015540__ 811 CAGGCCGCTTTTGAGCCGAT----TAAACA------AGCTGTAGCCGATC 850
BSNT_02584___ 857 ATGAGCATAAAGTGTTCCTCCTTCACGGCGTGACAGGAAGCGGAAAAACC 906
|||..|||.|.||.||.||.|||||||||||.||.||||||||.|||||.
RBAM_015540__ 851 ATGTCCATCACGTCTTTCTGCTTCACGGCGTCACGGGAAGCGGCAAAACG 900
BSNT_02584___ 907 GAAATTTATCTGCAATCAATTGAAAAAGTACTGGCGAAAGGAAAAGAAGC 956
||||||||.||||||||.|||||||||||.|||||.||||||.|||||||
RBAM_015540__ 901 GAAATTTACCTGCAATCCATTGAAAAAGTGCTGGCAAAAGGACAAGAAGC 950
BSNT_02584___ 957 CATCGTCCTCGTACCGGAAATATCGCTGACGCCGCAAATGGTCAACCGCT 1006
||||||.|||||.||||||||.|||.||||.|||||||||||||||||.|
RBAM_015540__ 951 CATCGTGCTCGTTCCGGAAATCTCGTTGACACCGCAAATGGTCAACCGTT 1000
BSNT_02584___ 1007 TCAAGGGCCGCTTCGGCTCCCAGGTGGCAGTCATGCACAGCGGTTTATCC 1056
|.||.||||||||||||||.|||||.||.||||||||||||||.||||||
RBAM_015540__ 1001 TTAAAGGCCGCTTCGGCTCACAGGTTGCGGTCATGCACAGCGGATTATCC 1050
BSNT_02584___ 1057 ACAGGAGAAAAATATGACGAGTGGCGTAAAATCCACCGGAAGGAAGTACG 1106
|||||.||||||||.||.||.|||||.||.||.||.||.||||||||.||
RBAM_015540__ 1051 ACAGGTGAAAAATACGATGAATGGCGGAAGATTCAGCGCAAGGAAGTCCG 1100
BSNT_02584___ 1107 GCTTGTCGTCGGTGCCAGATCCGCGATTTTTGCTCCGTTTGAAAATCTAG 1156
||||||||||||.||||||||.||.||.|||||.||||||||||||||.|
RBAM_015540__ 1101 GCTTGTCGTCGGAGCCAGATCGGCCATCTTTGCCCCGTTTGAAAATCTCG 1150
BSNT_02584___ 1157 GAATGATAATCATCGATGAAGAGCACGAGTCTTCCTATAAACAGGAAGAA 1206
|.|||||.||.||.||||||||||||||.|||||||||||.|||||.|||
RBAM_015540__ 1151 GCATGATCATTATTGATGAAGAGCACGAATCTTCCTATAAGCAGGAGGAA 1200
BSNT_02584___ 1207 ATGCCGCGCTATCATGCGAAAGAGGTGGCAATCAAGCGGGCCGAGCATCA 1256
||||||||.||||||||.||.||.||.||.|||...||||||||||||||
RBAM_015540__ 1201 ATGCCGCGGTATCATGCAAAGGACGTAGCCATCCGCCGGGCCGAGCATCA 1250
BSNT_02584___ 1257 CAGCTGCCCGGTTGTATTAGGGAGTGCTACGCCGACATTAGAGTCATATG 1306
||||||.|||||.||..|.|||||.||.|||||||||||.|||||||.||
RBAM_015540__ 1251 CAGCTGTCCGGTCGTCCTCGGGAGCGCCACGCCGACATTGGAGTCATTTG 1300
BSNT_02584___ 1307 CAAGAGCGCAAAAGGGCGTATACGAGCTTCTTTCACTGAAGCACCGTGTT 1356
|..|.|||.||||.|||||.||.|||||.|||.||.|.||.||.||.||.
RBAM_015540__ 1301 CGCGGGCGAAAAAAGGCGTTTATGAGCTGCTTCCATTAAAACATCGCGTA 1350
BSNT_02584___ 1357 AACCATCGGGTGATGCCTGAGGTTTCGCTTGTCGATATGAGAGAGGAGCT 1406
||.|..|.|.|.||||||||.|||||.||.||.|||||||||||.||.||
RBAM_015540__ 1351 AATCGCCAGCTCATGCCTGACGTTTCTCTCGTTGATATGAGAGAAGAACT 1400
BSNT_02584___ 1407 TAGAAACGGCAATCGCTCGATGTTTTCAGTTGAATTGATGGAAAAGCTTG 1456
.|||||||||||..|.||.|||||||||...|||.||||||||.||||.|
RBAM_015540__ 1401 GAGAAACGGCAACAGATCAATGTTTTCAAGAGAACTGATGGAACAGCTGG 1450
BSNT_02584___ 1457 AAGAAACGATTGCCAAGGGTGAGCAGGCGGTGCTGTTTTTAAATAAGAGG 1506
||||.|.|.||||.||....||||||||.||.||.|||.|.|||||..||
RBAM_015540__ 1451 AAGAGAAGCTTGCAAAAAAAGAGCAGGCCGTCCTTTTTCTGAATAAACGG 1500
BSNT_02584___ 1507 GGCTATTCTTCCTTTGTGATGTGCAGGGATTGCGGCTATGTCCCGCAATG 1556
||.|||||.||.||||||||||||.||||.|||||.|||||.||||||||
RBAM_015540__ 1501 GGGTATTCCTCGTTTGTGATGTGCCGGGACTGCGGTTATGTGCCGCAATG 1550
BSNT_02584___ 1557 CCCGCACTGCGACATTTCCATGACGTATCATCGTTACGGCCAAAGGCTGA 1606
.|||||.|||||||||||.|||||.|||||.||.|||||.||||||||||
RBAM_015540__ 1551 TCCGCATTGCGACATTTCGATGACTTATCACCGCTACGGACAAAGGCTGA 1600
BSNT_02584___ 1607 AATGCCATTATTGCGGACATGAAGAGCCTGTTCCGCACACTTGTCCTGAA 1656
||||||||||.|||||.|||||.||.|||||.|||...||.||.||.|||
RBAM_015540__ 1601 AATGCCATTACTGCGGCCATGAGGAACCTGTCCCGGGAACATGCCCGGAA 1650
BSNT_02584___ 1657 TGCGCAAGCGAGCATATCCGCTTTTTCGGAACGGGAACACAGCGAGTGGA 1706
||||..|||||.|||||||||||||||||.||||||||.|||||.|||||
RBAM_015540__ 1651 TGCGGCAGCGAACATATCCGCTTTTTCGGCACGGGAACGCAGCGTGTGGA 1700
BSNT_02584___ 1707 GGAAGAGCTGACAAAAGTGCTGCC-AAGTGCGAGAGTGATTCGGATGGAT 1755
|||.|||||.||.||||||||||| .|| |||.|.|||||..||||||||
RBAM_015540__ 1701 GGAGGAGCTTACCAAAGTGCTGCCTCAG-GCGCGCGTGATCAGGATGGAT 1749
BSNT_02584___ 1756 GTTGACACGACATCACGGAAAGGCGCCCATGAAAAATTACTGTCAGCTTT 1805
||.|||||.||.|||.|.||||||||||||||||||.|..|||||||.||
RBAM_015540__ 1750 GTGGACACCACTTCAAGAAAAGGCGCCCATGAAAAACTGTTGTCAGCGTT 1799
BSNT_02584___ 1806 CGGAGAAGGAAAAGCGGATATTCTTCTCGGAACGCAAATGATCGCGAAAG 1855
|||.|||||.||.||||||||.||.|||||.||||||||||||||.||||
RBAM_015540__ 1800 CGGTGAAGGGAAGGCGGATATCCTGCTCGGTACGCAAATGATCGCAAAAG 1849
BSNT_02584___ 1856 GGCTTGATTTTCCGAATGTCACGCTTGTCGGAGTGTTAAGTGCTGATACA 1905
||||||||||||||||.||.|||||.||||||||.|||||.||.|||||.
RBAM_015540__ 1850 GGCTTGATTTTCCGAACGTGACGCTCGTCGGAGTATTAAGCGCAGATACG 1899
BSNT_02584___ 1906 ACACTTCATATTCCTGATTTCAGATCGGCTGAAAAAACATTTCAGCTGTT 1955
||.|||||.||.|||||||||||..|.||.||.||.|||||.||||||.|
RBAM_015540__ 1900 ACGCTTCACATCCCTGATTTCAGGGCCGCGGAGAAGACATTCCAGCTGCT 1949
BSNT_02584___ 1956 AACGCAAGTCAGCGGCCGGGCAGGCAGGCATGAAAAGCCCGGCCATGTCA 2005
.|||||.||.|||||||||||.||..|||||||||||||.||....||..
RBAM_015540__ 1950 GACGCAGGTAAGCGGCCGGGCCGGGCGGCATGAAAAGCCGGGAACGGTGG 1999
BSNT_02584___ 2006 TCATTCAAACGTATACACCGTCTCATTACAGTATCCAGCTGACGAAAACA 2055
|||||||||||||||||||||||||||||||.||.||||||||||||||.
RBAM_015540__ 2000 TCATTCAAACGTATACACCGTCTCATTACAGCATTCAGCTGACGAAAACG 2049
BSNT_02584___ 2056 CACGATTATGAAACGTTCTATCAGCATGAAATGGCGCACAGGAGAGAGCA 2105
|||||.||||||||.||.|.||||||.||||||||||||||.||.|..||
RBAM_015540__ 2050 CACGACTATGAAACTTTTTTTCAGCAGGAAATGGCGCACAGAAGGGCCCA 2099
BSNT_02584___ 2106 ATCCTATCCGCCATACTACTATTTGGCTCTTGTGACTGTTTCTCATGAGG 2155
.||.||.|||||.||.||.||..||||.||.|||||.|||||||||||.|
RBAM_015540__ 2100 GTCATACCCGCCTTATTATTACGTGGCGCTGGTGACCGTTTCTCATGAAG 2149
BSNT_02584___ 2156 AAGTGGCGAAAGCAGCGGTTACAGCTGAAAAAATCGCTCATTTTTTGAAA 2205
|||.|||.|||||.|||||.||.||.|||||.||..|..|.|.|||.|..
RBAM_015540__ 2150 AAGCGGCAAAAGCCGCGGTCACCGCAGAAAAGATTACAAACTATTTAAGG 2199
BSNT_02584___ 2206 GCAAACTGCGGAGCTGACACGAAAATTCTCGGACCAAGC-GCGTCGCCGA 2254
||....|||||..||||.||||||||||||||.|| .|| ||.||.||||
RBAM_015540__ 2200 GCGGGATGCGGGCCTGATACGAAAATTCTCGGGCC-GGCGGCTTCCCCGA 2248
BSNT_02584___ 2255 TAGCCAGGATCAAAGATAGATATCGCTATCAATGCGTGATAAAATACAAA 2304
|.||||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_015540__ 2249 TCGCCAGGATCAAAGATAGATATCGCTATCAATGCGTGATAAAATACAGA 2298
BSNT_02584___ 2305 CAGGAAACCCAGTTATCTGCTTTA-TTGAAGAAGATACTGGAACATTATA 2353
|||||||.|.|||| .|.|.||.| |||||.|||||||||||.||.||||
RBAM_015540__ 2299 CAGGAAAACGAGTT-GCAGATTCAGTTGAAAAAGATACTGGAGCACTATA 2347
BSNT_02584___ 2354 AACGCGAAATTGAACAAAAACATGTAATGATTTCAATTGATATGAATCCT 2403
|||||||.||||..|||||.|||||.|||||||||||.|||||||||||.
RBAM_015540__ 2348 AACGCGACATTGCGCAAAAGCATGTCATGATTTCAATCGATATGAATCCG 2397
BSNT_02584___ 2404 TATATGATGATGTAA 2418
||.|||.||||||||
RBAM_015540__ 2398 TACATGCTGATGTAA 2412
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