Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02576 and RBAM_015480
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_02576___yloB.1.9828.seq
# -bsequence dna-align/RBAM_015480___yloB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02576___yloB-RBAM_015480___yloB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02576___yloB-RBAM_015480___yloB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02576___yloB
# 2: RBAM_015480___yloB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2703
# Identity: 2077/2703 (76.8%)
# Similarity: 2077/2703 (76.8%)
# Gaps: 60/2703 ( 2.2%)
# Score: 7825.0
#
#
#=======================================
BSNT_02576___ 1 ATGAAGTTTCATGAAATGGGACAAACAGATTTACTAGAGGCAACCAATAC 50
||||||||||||||||||||||||||.|||||.||..|.|||||.|||||
RBAM_015480__ 1 ATGAAGTTTCATGAAATGGGACAAACCGATTTGCTGAAAGCAACAAATAC 50
BSNT_02576___ 51 GTCCATGAAACAAGGATTAACAGAAAAAGAGGTAAAAAAACGCCTTGACA 100
||||||.|||||.||.||.||.|||||||||||.||||||||||||||.|
RBAM_015480__ 51 GTCCATTAAACAGGGGTTGACCGAAAAAGAGGTGAAAAAACGCCTTGAAA 100
BSNT_02576___ 101 AGCATGGACCAAACGAGCTGCAAGAAGGGAAAAAAACTTCAGCGCTTCTC 150
||||.|||||.||||||||.||.||.||.||.|..||..|.|||.|...|
RBAM_015480__ 101 AGCACGGACCGAACGAGCTTCAGGAGGGCAAGAGGACACCGGCGATCGCC 150
BSNT_02576___ 151 TTGTTTTTCGCGCAGTTCAAAGATTTTATGGTGCTTGTGCTTCTGGCGGC 200
.||||||||||.||.||.|||||||||||||||||.|||||.||||||||
RBAM_015480__ 151 GTGTTTTTCGCCCAATTTAAAGATTTTATGGTGCTCGTGCTGCTGGCGGC 200
BSNT_02576___ 201 AACGTTAATCTCAGGTTTTCTTGGTGAATATGTAGATGCGGTTGCGATTA 250
|||.|||||.||.||.|||.|.||.||||||||||||||.||.|||||||
RBAM_015480__ 201 AACCTTAATATCCGGGTTTTTAGGCGAATATGTAGATGCCGTAGCGATTA 250
BSNT_02576___ 251 TTGCGATTGTGTTTGTGAATGGCATACTCGGTTTCTTTCAAGAAAGGCGT 300
|.||||||||.|||||.|||||..|.||||||||.||||||||..||||.
RBAM_015480__ 251 TGGCGATTGTATTTGTCAATGGGGTTCTCGGTTTTTTTCAAGAGCGGCGG 300
BSNT_02576___ 301 GCTGAGCAATCTCTTCAGGCTTTAAAAGAGCTTTCAACACCGCA--TGTC 348
||.||..|.|||.|.||.||.|||||||||||.|||||.|||.| ||||
RBAM_015480__ 301 GCGGAAAAGTCTTTACATGCATTAAAAGAGCTGTCAACGCCGTATGTGTC 350
BSNT_02576___ 349 ATGGCACTCAGAGAAGGAAGCTGGACAAAGATTCCTTCTAAGGAACTGGT 398
| ||..|..|.||.||.|||||||..||.||||..||.|||||.||.||
RBAM_015480__ 351 A--GCGTTGCGGGACGGGAGCTGGAAGAAAATTCAGTCCAAGGAGCTCGT 398
BSNT_02576___ 399 GCCGGGTGATATTGTGAAATTTACGAGCGGGGACAGAATTGGCGCAGACG 448
.||.||.|||||..||||||||.|.|||||.|||.|.||||||||.||.|
RBAM_015480__ 399 TCCCGGCGATATCATGAAATTTTCAAGCGGCGACCGGATTGGCGCGGATG 448
BSNT_02576___ 449 TTCGAATTGTTGAAGCAAGAAGCCTTGAAATAGAAGAATCAGCGCTGACC 498
|.||.|||||||||||.|.||||||||||||.||.|||||.|||||||||
RBAM_015480__ 449 TGCGGATTGTTGAAGCGAAAAGCCTTGAAATTGAGGAATCGGCGCTGACC 498
BSNT_02576___ 499 GGGGAATCAATCCCGGTTGTGAAGCATGCTGATAAATTGAAAAAACCGGA 548
|||||||||||.|||||.||.||.||.|||||||||.|||.|||.|||||
RBAM_015480__ 499 GGGGAATCAATTCCGGTGGTTAAACAAGCTGATAAACTGAGAAAGCCGGA 548
BSNT_02576___ 549 TGTTTCACTTGGCGATATTACCAATATGGCATTTATGGGTACGATTGTGA 598
||||||..|.|||||.||.|.|||||||||.||||||||||||||.||.|
RBAM_015480__ 549 TGTTTCGTTAGGCGACATCAGCAATATGGCGTTTATGGGTACGATCGTAA 598
BSNT_02576___ 599 CCCGCGGCAGCGGTGTGGGGGTTGTCGTCGGGACAGGAATGAATACGGCT 648
|.||||||||||||||.||.||.||||||||.|||||||||||||||||.
RBAM_015480__ 599 CGCGCGGCAGCGGTGTCGGCGTCGTCGTCGGTACAGGAATGAATACGGCA 648
BSNT_02576___ 649 ATGGGGAAAATTGCCGACATGCTTGAATCGGCAGGGA-CATTGTCAACCC 697
|||||||||||.|||||.|||||.|||||.||.||.| |.|| |||||.|
RBAM_015480__ 649 ATGGGGAAAATCGCCGATATGCTGGAATCCGCCGGCAGCCTT-TCAACAC 697
BSNT_02576___ 698 CGCTGCAAAGAAGACTGGAGCAGCTCGGGAAGATTTTGATTGTTGTTGCA 747
|||||||..|||||||.||..|||||||.||.|||||.|||.|.||.||.
RBAM_015480__ 698 CGCTGCAGCGAAGACTTGAAGAGCTCGGCAAAATTTTAATTATCGTCGCG 747
BSNT_02576___ 748 TTGCTTTTGACCGTACTTGTCGTTGCTGTCGGTGTTATTCAGGGTCATGA 797
.|.|||||.||.|||.|.||||||||.|||||.||..|.|||||.|||||
RBAM_015480__ 748 CTCCTTTTAACGGTATTGGTCGTTGCAGTCGGCGTCTTACAGGGACATGA 797
BSNT_02576___ 798 TCTGTACAGTATGTTTTTAGCAGGTGTCTCGTTAGCGGTAGCTGCTATTC 847
.||.|||||.||||||||.||.||.||.||.||.||.||.||.||.||||
RBAM_015480__ 798 GCTTTACAGCATGTTTTTGGCCGGGGTGTCATTGGCCGTCGCCGCGATTC 847
BSNT_02576___ 848 CGGAGGGGCTGCCGGCGATTGTGACAGTGGCGCTTTCGCTTGGTGTACAG 897
||||.|||||.||.||.|||||.||.|||||..|.||..|.||.||.|||
RBAM_015480__ 848 CGGAAGGGCTTCCCGCCATTGTTACGGTGGCATTATCAATCGGCGTCCAG 897
BSNT_02576___ 898 CGGATGATTAAACAAAAATCCATTGTTAGAAAGCTTCCTGCTGTTGAAAC 947
||.|||||.|||||||||||.|||||.||||||||.||.||.||||||||
RBAM_015480__ 898 CGCATGATCAAACAAAAATCAATTGTCAGAAAGCTCCCGGCGGTTGAAAC 947
BSNT_02576___ 948 GCTTGGG-TGTGCGTCTATCATTTGTTCAGATAAAACAGGGACAATGACC 996
.||||| ||.||.|||.||||||||||.||||||||.||.||..||||.
RBAM_015480__ 948 -ATTGGGCTGCGCCTCTGTCATTTGTTCTGATAAAACCGGCACGCTGACA 996
BSNT_02576___ 997 CAAAACAAAATGACGGTGACACATGTCTGGTCCGGAGGGAAAACATGGAG 1046
||||||||||||||.||.||.|||.|.|||||.||.||.|||||||..|.
RBAM_015480__ 997 CAAAACAAAATGACCGTCACCCATATGTGGTCAGGGGGAAAAACATTTAA 1046
BSNT_02576___ 1047 AGTGGCAGGGGCCGGCTATGAACCGAAAGGAAGCTTCACACTAAACGAAA 1096
||||.||||...|||||||||.|||.|.||....|||||.|.|.|.||..
RBAM_015480__ 1047 AGTGTCAGGCATCGGCTATGAGCCGGAGGGCGTTTTCACCCGAGATGAGC 1096
BSNT_02576___ 1097 AAGAGATCAATGTC-AATGAACATAAGCCGCTTCAGCAGATGCTTCTGTT 1145
..||.||||| |.| ||.||..|.|||...|||.|.||||||||..|.||
RBAM_015480__ 1097 GGGAAATCAA-GCCGAAAGATGAGAAGATTCTTGAACAGATGCTGGTTTT 1145
BSNT_02576___ 1146 CGGAGCGCTTTGTAACAACTCCAATATTG---AGAAAAGAGACGGCGAAT 1192
|||.|||.|.||.||||..|||.|.||.| .||| |||||||.|.|
RBAM_015480__ 1146 CGGCGCGTTGTGCAACACATCCGAAATCGCACTGAA---AGACGGCCATT 1192
BSNT_02576___ 1193 ATGTGCTTGACGGAGATCCGACAGAGGGAGCGCTGCTCACCGCGGCAAGA 1242
||||.||.|||||.|||||||||||.|||||||||||.||.||.||||||
RBAM_015480__ 1193 ATGTACTCGACGGCGATCCGACAGAAGGAGCGCTGCTGACGGCTGCAAGA 1242
BSNT_02576___ 1243 AAAGGCGGTTTTTCAAAGGAGTTTGTTGAATCA-----AACTACCGGGTG 1287
||.|||||.|.||||||.|| |||..||| .|||||||.|||
RBAM_015480__ 1243 AAGGGCGGCTATTCAAACGA-----TTGGCTCAGCGGGCACTACCGCGTG 1287
BSNT_02576___ 1288 ATCGAAGAATTTCCGTTTGATTCTGCACGGAAAATGATGACTGTCATCGT 1337
.|.|..||.|||||||||||.||.|..||.|||||||||||.|||||.||
RBAM_015480__ 1288 GTTGCCGAGTTTCCGTTTGACTCCGTCCGCAAAATGATGACCGTCATTGT 1337
BSNT_02576___ 1338 AGAGGATCAAGACAGAAAGCGCTATATCATTACAAAAGGTGCACCGGATG 1387
||||||||..||.|.|||||..|...||||.||.|||||.||.||.||||
RBAM_015480__ 1338 AGAGGATCGGGAAAAAAAGCAGTTCGTCATCACTAAAGGAGCGCCCGATG 1387
BSNT_02576___ 1388 TACTGATGCAGCGATCTTCCCGTAT-TTAT-TATGACGGCTC----AGCG 1431
|.|||||..|.||.||.||.| || |.|| ||.|||| | |||
RBAM_015480__ 1388 TGCTGATTGACCGCTCGTCAC--ATCTGATGTACGACG---CAAGAAGC- 1431
BSNT_02576___ 1432 GCTCTTTTTTCAAATGAAAGAAAAGCAGAAACAGAGGCGGTATTAAGACA 1481
||.|..||||||...||||..|||||||||||.||.|||||..|.|.|.|
RBAM_015480__ 1432 GCGCCATTTTCAGGAGAAAAGAAAGCAGAAACGGAAGCGGTTCTGAAAGA 1481
BSNT_02576___ 1482 TTTGGCATCACAGGCGCTCAGAACGATAGCGGTCGCCTACAGGCCGATAA 1531
..||||.||.||.||..|..|.|||||.|||.|.||.||.|..|.|.|.|
RBAM_015480__ 1482 GCTGGCGTCGCAAGCTTTGCGTACGATCGCGATTGCTTATAAACAGCTTA 1531
BSNT_02576___ 1532 AAGCAGGCGAAACACCGTCAATGGAGCAGGCGGAAAAAGACCTGACCATG 1581
|..|.||.||||..|||.||||||||||||||||||||.|.|||||.||.
RBAM_015480__ 1532 AGCCCGGAGAAAAGCCGACAATGGAGCAGGCGGAAAAAAATCTGACGATA 1581
BSNT_02576___ 1582 CTTGGCCTTTCAGGTATCATTGATCCCCCGCGGCCGGAAGTCAGACAGGC 1631
||.|||.|.|||||.||.||||||||.||.||.||.||.|||||||||||
RBAM_015480__ 1582 CTCGGCTTGTCAGGCATGATTGATCCGCCCCGTCCAGAGGTCAGACAGGC 1631
BSNT_02576___ 1632 GATAAAAGAATGCCGTGAAGCAGGAATTAAGACCGTTATGATAACAGGTG 1681
|||.|||||||||||||||||.||.|||||.||.||||||||.|||||.|
RBAM_015480__ 1632 GATTAAAGAATGCCGTGAAGCCGGCATTAAAACGGTTATGATCACAGGGG 1681
BSNT_02576___ 1682 ATCATGTAGAAACCGCTAAAGCGATAGCGAAAGACTTGCGCCTCCTTCCG 1731
||||.||.|||||.||.||.||.||.||.|||||.|||||.||.||||||
RBAM_015480__ 1682 ATCACGTCGAAACGGCAAAGGCCATTGCAAAAGATTTGCGTCTTCTTCCG 1731
BSNT_02576___ 1732 AAAA----GCG-GCAAAATCATGGACGGCAAGATGCTGAATGAACTTTCT 1776
|||| ||| | |.|||||||||||||.|||||||||.|||.|.
RBAM_015480__ 1732 AAAAAGGGGCGTG-----TGATGGACGGCAAGACGCTGAATGAGCTTACG 1776
BSNT_02576___ 1777 CAAGAAGAGCTT-TC---TCATGTGGTGGAGGATGTTTATGTATTTGCCC 1822
.|..||||.||| || .|| ||.||.|||||.||.||.||.||.|
RBAM_015480__ 1777 GAGAAAGAACTTATCGAAACA----GTCGATGATGTCTACGTCTTCGCAC 1822
BSNT_02576___ 1823 GCGTTTCCCCTGAACATAAACTAAAAATCGTAAAAGCCTATCAGGAGAAC 1872
|.||.||.||||||||||||.|.|||||.||.|||||.|..|||||.|||
RBAM_015480__ 1823 GTGTGTCGCCTGAACATAAATTGAAAATTGTCAAAGCGTTCCAGGAAAAC 1872
BSNT_02576___ 1873 GGGCATATTGTGGCGATGACGGGAGACGGCGTCAATGATGCTCCTGCCAT 1922
||.||..|.||.||.||||||||||||||.||.|||||.||.||.|||||
RBAM_015480__ 1873 GGACACGTCGTCGCCATGACGGGAGACGGGGTTAATGACGCGCCGGCCAT 1922
BSNT_02576___ 1923 TAAACAAGCTGATATCGGCGTCTCTATGGGCATTACCGGGACAGATGTGG 1972
.||.||.||.||||||||.||..|.||||||.|.||.||.||.|||||||
RBAM_015480__ 1923 AAAGCAGGCAGATATCGGTGTTGCCATGGGCGTGACGGGAACGGATGTGG 1972
BSNT_02576___ 1973 CCAAAGAAGCATCATCTCTTGTTCTCGCAGATGATAATTTTGCGACGATT 2022
|.||.|||||.||.|||||..||||.|.|||||||||.|||||.||||||
RBAM_015480__ 1973 CAAAGGAAGCCTCTTCTCTCATTCTGGTAGATGATAACTTTGCTACGATT 2022
BSNT_02576___ 2023 AAATCAGCGATAAAAGAAGGCAGGAACATCTACGAAAATATCAGGAAGTT 2072
||||||||.||||||||.||..||||.|||||.||||||||.||.||.||
RBAM_015480__ 2023 AAATCAGCCATAAAAGAGGGACGGAATATCTATGAAAATATAAGAAAATT 2072
BSNT_02576___ 2073 TATCAGATACCTGTTGGCGTCTAACGTCGGAGAAATCCTTGTCATGCTGT 2122
..||.|.||..||.|.||.||.||||||||.|||||..|.||.|||||||
RBAM_015480__ 2073 CGTCCGTTATTTGCTCGCCTCCAACGTCGGTGAAATTTTAGTGATGCTGT 2122
BSNT_02576___ 2123 TTGCGATGCTGCTCGCCCTTCCTTTACCGCTCGTTCCGATTCAGATTTTG 2172
||||||||||.|||||.||.||..|.||||||||||||||||||||..||
RBAM_015480__ 2123 TTGCGATGCTTCTCGCTCTGCCGCTGCCGCTCGTTCCGATTCAGATACTG 2172
BSNT_02576___ 2173 TGGGTCAACTTGGTGACGGACGGATTGCCGGCAATGGCGCTCGGCATGGA 2222
|||||.|||||.||.||.|||||..|||||||.|||||.|||||.|||||
RBAM_015480__ 2173 TGGGTGAACTTAGTCACTGACGGGCTGCCGGCGATGGCCCTCGGTATGGA 2222
BSNT_02576___ 2223 TCAGCCGGAAGGAGACGTCATGAAGCGCAAGCCCCGTCATCCGAAAGAAG 2272
||||||||||||||||.|.||||.|||.|||||.||.||.||||||||||
RBAM_015480__ 2223 TCAGCCGGAAGGAGACCTGATGAGGCGGAAGCCGCGGCACCCGAAAGAAG 2272
BSNT_02576___ 2273 GGGTATTTGCCCGCAAGCTAGGATGGAAGGTCGTTTCCAGAGGATTTTTA 2322
|.||.|||||..|.||.||.||.|||||.|||||.||.|||||.||||||
RBAM_015480__ 2273 GAGTGTTTGCGAGAAAACTGGGCTGGAAAGTCGTATCAAGAGGGTTTTTA 2322
BSNT_02576___ 2323 ATCGGAGTTGCCACTATTTTAGCGTTTATCATTGTATACCACCGCAATCC 2372
|||||||.|||.||.|||||||||||||||||.||.||.|||||||||||
RBAM_015480__ 2323 ATCGGAGCTGCAACCATTTTAGCGTTTATCATCGTCTATCACCGCAATCC 2372
BSNT_02576___ 2373 GGAAAACTTAGCTTATGCCCAGACGATCGCGTTTGCCACATTGGTTCTCG 2422
.|||||..|..|.||.||.|||||..|.||.||.||.||..|.||.||.|
RBAM_015480__ 2373 TGAAAATCTGCCCTACGCACAGACCGTTGCATTCGCGACTCTTGTCCTGG 2422
BSNT_02576___ 2423 CTCAGCTTATTCACGTGTTTGACTGCCGCAGCGAAACTTCTGTTTTCTCT 2472
||||||||||.|||||||||||||||||.||||||||.|||||||||||.
RBAM_015480__ 2423 CTCAGCTTATACACGTGTTTGACTGCCGGAGCGAAACGTCTGTTTTCTCC 2472
BSNT_02576___ 2473 AGAAATCCGTTTCAAAACCTGTATTTAATCGGCGCGGT-ATTGTCATCCA 2521
.|.|||||||||.||||..|.|||.|..||||.||..| ||| ||.||.|
RBAM_015480__ 2473 CGGAATCCGTTTGAAAATATCTATCTGCTCGGGGCCATCATT-TCTTCTA 2521
BSNT_02576___ 2522 TTTTGCTGATGCTTGTAGTAATCTACTATCCGCCGCTTCAGCCGATTTTC 2571
|.||.||||||.|..|.||.|||||.|||||||||||.||||||||||||
RBAM_015480__ 2522 TCTTCCTGATGGTCATCGTCATCTATTATCCGCCGCTGCAGCCGATTTTC 2571
BSNT_02576___ 2572 CATACTGTAGCC-ATCACGCCGGGGGACTGGATGCTCGTCATCGGTATGT 2620
.|.||.|| ||| ||.||||||||.||.||||||||..|.||||||||||
RBAM_015480__ 2572 AAAACAGT-GCCGATTACGCCGGGCGATTGGATGCTGATTATCGGTATGT 2620
BSNT_02576___ 2621 CCGCCATCCCTACTTTTTTGCTGGCGGGGTCACTTTTAACAAGAAAAAAA 2670
|.|.|||.||||||||||||||||||||.||||||||.||||||||||||
RBAM_015480__ 2621 CGGGCATACCTACTTTTTTGCTGGCGGGTTCACTTTTGACAAGAAAAAAA 2670
BSNT_02576___ 2671 TAA 2673
|||
RBAM_015480__ 2671 TAA 2673
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