Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02571 and RBAM_015450

See Amino acid alignment / Visit BSNT_02571 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:23
# Commandline: needle
#    -asequence dna-align/BSNT_02571___ylnE.1.9828.seq
#    -bsequence dna-align/RBAM_015450___sirB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02571___ylnE-RBAM_015450___sirB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02571___ylnE-RBAM_015450___sirB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02571___ylnE
# 2: RBAM_015450___sirB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 818
# Identity:     564/818 (68.9%)
# Similarity:   564/818 (68.9%)
# Gaps:          64/818 ( 7.8%)
# Score: 1847.5
# 
#
#=======================================

BSNT_02571___      1 ATGAAACAAGCAATTTTATATGTCGGCCACGGCAGCCGGGTCAAAAAAGC     50
                     |||||.||.||.||||||||..||||.|||||.|||.||.|.||||||||
RBAM_015450__      1 ATGAAGCAGGCGATTTTATACATCGGGCACGGAAGCAGGATGAAAAAAGC     50

BSNT_02571___     51 GCAGCAAGAAGCCGCAGCCTTTTTGGAAGGATGCAAGGCTCACATCTCTG    100
                     ||||..|||..|.||.||.|||||..||||.||||.|.|.||   |.|||
RBAM_015450__     51 GCAGACAGAGTCGGCGGCGTTTTTAAAAGGGTGCATGCCGCA---CGCTG     97

BSNT_02571___    101 ----TGCCAGTACAAGAAATCAGCTTTTTAGAGCTTCAGGAGCCGACAAT    146
                         |.||| |.||.|||||..|.||||||||.||.|||||.|||.|.||
RBAM_015450__     98 ACGCTCCCA-TTCAGGAAATTTGTTTTTTAGAACTGCAGGAACCGTCTAT    146

BSNT_02571___    147 TGAGACAGGATTTGAAGCATGTGTGAAGCAAGGCGCCACTCATATCGCAG    196
                     |||..|.|||||||||||||||||.|..|||||||||||||||||.||.|
RBAM_015450__    147 TGAAGCGGGATTTGAAGCATGTGTCAGACAAGGCGCCACTCATATTGCGG    196

BSNT_02571___    197 TGGTGCCTCTGCTTCTTTTAACAGCTGCGCATGCAAAACATGATATTCCG    246
                     ..||||||.||||.||.||.||.|||||.||.|||||||||||.||||||
RBAM_015450__    197 CCGTGCCTTTGCTGCTGTTGACCGCTGCCCACGCAAAACATGACATTCCG    246

BSNT_02571___    247 GAAGAAATTGCCCGTG--------CTGCATCTCGATAT--CCGTCAGTCC    286
                     |..|||||.|||||||        |||||||.||||||  ..||.|    
RBAM_015450__    247 GCTGAAATCGCCCGTGCGGCGGCCCTGCATCCCGATATAAAAGTGA----    292

BSNT_02571___    287 GCATTTCATACGGAAAGCCGATCGGGATTGACGAAGAAGTAGTCAAGGCT    336
                           ||||.||....||||||||..|.|||||.|||||.||.||.||.
RBAM_015450__    293 ------CATATGGTGTTCCGATCGGAGTGGACGATGAAGTCGTAAAAGCG    336

BSNT_02571___    337 GTATATCACCGAATGAAAGACATAGGTGT-TCCATATGAAAATGCCAGAG    385
                     ||..||||.||.||..||||.|..||.|| .|||| |||..|.||.|.||
RBAM_015450__    337 GTGCATCATCGCATTGAAGATACCGGAGTGCCCAT-TGAGCAGGCGAAAG    385

BSNT_02571___    386 TGGTACTCATCGGAAGGGGAAGTTCAGATCCTGATGTCAAAAGAGACGTA    435
                     ||||.||.||||||||.|||||..|||||||.|..||.||.|..|..||.
RBAM_015450__    386 TGGTGCTGATCGGAAGAGGAAGCACAGATCCGGCAGTTAAGAACGCAGTC    435

BSNT_02571___    436 ACTGGTATTGC----TAATCTTCTTCAGGAAATGATTCCAGTCAAGGAAG    481
                     |.||..|||||    .||    |||.|||..||.|..||.||.||.||||
RBAM_015450__    436 AGTGAGATTGCCGGAAAA----CTTGAGGCGATTACACCTGTTAAAGAAG    481

BSNT_02571___    482 TCATTCCGTGCTTTTTGACAGCATGCGGCCCTAATTACAAAGAGGTTTTT    531
                     ||||.||.||.|||||.||||||||.|..||..|.||.|||||.||.|||
RBAM_015450__    482 TCATCCCTTGTTTTTTAACAGCATGTGATCCGCACTATAAAGAAGTGTTT    531

BSNT_02571___    532 TCAGAACTTAAAAAAGATGACGGCATAACAACC---TTTATCGTTCCATA    578
                     .|.|..|||.||.|.||||||||   |.||.||   ||||||||||||||
RBAM_015450__    532 GCCGGCCTTGAAGAGGATGACGG---AGCACCCGTTTTTATCGTTCCATA    578

BSNT_02571___    579 TTTGCTCTTTACGGGTATGCTGATGAATGAAATCGAACGAGAGGTTCAGA    628
                     |.|.||.|||||.||..|..|.||||.|||.||.|||||.||.||||| |
RBAM_015450__    579 TCTTCTGTTTACCGGGCTTTTAATGACTGAGATTGAACGGGAAGTTCA-A    627

BSNT_02571___    629 AA---TTAAAAGCTCATAATCCGAACGTCTACCTCTCTTCCTATATCGGT    675
                     ||   |.|||.|.||  ||||..||.||..|.|||.||||.||..|.|||
RBAM_015450__    628 AAGCTTCAAACGGTC--AATCAAAATGTTCATCTCGCTTCATACTTAGGT    675

BSNT_02571___    676 TTTCATCCTCATGTGAAAAACGCATTTTTGAACCGTGTGAGAGAAACTG-    724
                     |||||.||.|||.|.||..|.||.|||||||||||||||..||||.||| 
RBAM_015450__    676 TTTCACCCGCATATTAAGCAGGCGTTTTTGAACCGTGTGTCAGAAGCTGT    725

BSNT_02571___    725 -CGGCAAATTCTGAGGGACAATTTGATTTTGATGG-----AGATTCATAT    768
                      ||  |||..|.|..||.||.|||||||||.|.||     ||     |||
RBAM_015450__    726 TCG--AAACCCCGGCGGTCAGTTTGATTTTAAGGGGGGACAG-----TAT    768

BSNT_02571___    769 GCTTCCGCTGCACATTAG    786
                     |||.||.||||||||||.
RBAM_015450__    769 GCTGCCTCTGCACATTAA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02571 and RBAM_015450

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
